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The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)
In this study, we report the complete plastome sequence of Kuhlhasseltia nakaiana (F.Maek.) Ormerod (Orchidaceae) (NCBI acc. no. KY354041), an endangered plant species protected by the national law of Korea. The gene order and number in the K. nakaiana plastome were similar to a typical orchid plast...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799528/ https://www.ncbi.nlm.nih.gov/pubmed/33473952 http://dx.doi.org/10.1080/23802359.2017.1390408 |
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author | Kim, Young-Kee Kwak, Myoung Hai Hong, Ja-Ram Kim, Hoe-Won Jo, Sangjin Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong |
author_facet | Kim, Young-Kee Kwak, Myoung Hai Hong, Ja-Ram Kim, Hoe-Won Jo, Sangjin Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong |
author_sort | Kim, Young-Kee |
collection | PubMed |
description | In this study, we report the complete plastome sequence of Kuhlhasseltia nakaiana (F.Maek.) Ormerod (Orchidaceae) (NCBI acc. no. KY354041), an endangered plant species protected by the national law of Korea. The gene order and number in the K. nakaiana plastome were similar to a typical orchid plastome. The complete plastome was 147,614 bp in length and consisted of a large single copy region of 81,617 bp and a small single copy region of 13,673 bp, separated by two inverted repeats of 26,162 bp. The plastome contained 103 genes, of which 69 were protein-coding genes, 30 were tRNA genes, and four were rRNA genes. Fourteen genes contained one intron and two genes (clpP and ycf3) had two introns. The AT content of the plastome was 60.5%. A total of 74 simple sequence repeat regions were identified from the plastome. Phylogenetic analysis determined that K. nakaiana was a member of the tribe Cranichideae and revealed the sister group relationship between K. nakaiana and Ludisia discolor within the tribe Cranichideae. |
format | Online Article Text |
id | pubmed-7799528 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77995282021-01-19 The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) Kim, Young-Kee Kwak, Myoung Hai Hong, Ja-Ram Kim, Hoe-Won Jo, Sangjin Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement In this study, we report the complete plastome sequence of Kuhlhasseltia nakaiana (F.Maek.) Ormerod (Orchidaceae) (NCBI acc. no. KY354041), an endangered plant species protected by the national law of Korea. The gene order and number in the K. nakaiana plastome were similar to a typical orchid plastome. The complete plastome was 147,614 bp in length and consisted of a large single copy region of 81,617 bp and a small single copy region of 13,673 bp, separated by two inverted repeats of 26,162 bp. The plastome contained 103 genes, of which 69 were protein-coding genes, 30 were tRNA genes, and four were rRNA genes. Fourteen genes contained one intron and two genes (clpP and ycf3) had two introns. The AT content of the plastome was 60.5%. A total of 74 simple sequence repeat regions were identified from the plastome. Phylogenetic analysis determined that K. nakaiana was a member of the tribe Cranichideae and revealed the sister group relationship between K. nakaiana and Ludisia discolor within the tribe Cranichideae. Taylor & Francis 2017-10-14 /pmc/articles/PMC7799528/ /pubmed/33473952 http://dx.doi.org/10.1080/23802359.2017.1390408 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Kim, Young-Kee Kwak, Myoung Hai Hong, Ja-Ram Kim, Hoe-Won Jo, Sangjin Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) |
title | The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) |
title_full | The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) |
title_fullStr | The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) |
title_full_unstemmed | The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) |
title_short | The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) |
title_sort | complete plastome sequence of the endangered orchid kuhlhasseltia nakaiana (orchidaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799528/ https://www.ncbi.nlm.nih.gov/pubmed/33473952 http://dx.doi.org/10.1080/23802359.2017.1390408 |
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