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The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)

In this study, we report the complete plastome sequence of Kuhlhasseltia nakaiana (F.Maek.) Ormerod (Orchidaceae) (NCBI acc. no. KY354041), an endangered plant species protected by the national law of Korea. The gene order and number in the K. nakaiana plastome were similar to a typical orchid plast...

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Autores principales: Kim, Young-Kee, Kwak, Myoung Hai, Hong, Ja-Ram, Kim, Hoe-Won, Jo, Sangjin, Sohn, Jung-Yeon, Cheon, Se-Hwan, Kim, Ki-Joong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799528/
https://www.ncbi.nlm.nih.gov/pubmed/33473952
http://dx.doi.org/10.1080/23802359.2017.1390408
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author Kim, Young-Kee
Kwak, Myoung Hai
Hong, Ja-Ram
Kim, Hoe-Won
Jo, Sangjin
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
author_facet Kim, Young-Kee
Kwak, Myoung Hai
Hong, Ja-Ram
Kim, Hoe-Won
Jo, Sangjin
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
author_sort Kim, Young-Kee
collection PubMed
description In this study, we report the complete plastome sequence of Kuhlhasseltia nakaiana (F.Maek.) Ormerod (Orchidaceae) (NCBI acc. no. KY354041), an endangered plant species protected by the national law of Korea. The gene order and number in the K. nakaiana plastome were similar to a typical orchid plastome. The complete plastome was 147,614 bp in length and consisted of a large single copy region of 81,617 bp and a small single copy region of 13,673 bp, separated by two inverted repeats of 26,162 bp. The plastome contained 103 genes, of which 69 were protein-coding genes, 30 were tRNA genes, and four were rRNA genes. Fourteen genes contained one intron and two genes (clpP and ycf3) had two introns. The AT content of the plastome was 60.5%. A total of 74 simple sequence repeat regions were identified from the plastome. Phylogenetic analysis determined that K. nakaiana was a member of the tribe Cranichideae and revealed the sister group relationship between K. nakaiana and Ludisia discolor within the tribe Cranichideae.
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spelling pubmed-77995282021-01-19 The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae) Kim, Young-Kee Kwak, Myoung Hai Hong, Ja-Ram Kim, Hoe-Won Jo, Sangjin Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement In this study, we report the complete plastome sequence of Kuhlhasseltia nakaiana (F.Maek.) Ormerod (Orchidaceae) (NCBI acc. no. KY354041), an endangered plant species protected by the national law of Korea. The gene order and number in the K. nakaiana plastome were similar to a typical orchid plastome. The complete plastome was 147,614 bp in length and consisted of a large single copy region of 81,617 bp and a small single copy region of 13,673 bp, separated by two inverted repeats of 26,162 bp. The plastome contained 103 genes, of which 69 were protein-coding genes, 30 were tRNA genes, and four were rRNA genes. Fourteen genes contained one intron and two genes (clpP and ycf3) had two introns. The AT content of the plastome was 60.5%. A total of 74 simple sequence repeat regions were identified from the plastome. Phylogenetic analysis determined that K. nakaiana was a member of the tribe Cranichideae and revealed the sister group relationship between K. nakaiana and Ludisia discolor within the tribe Cranichideae. Taylor & Francis 2017-10-14 /pmc/articles/PMC7799528/ /pubmed/33473952 http://dx.doi.org/10.1080/23802359.2017.1390408 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Kim, Young-Kee
Kwak, Myoung Hai
Hong, Ja-Ram
Kim, Hoe-Won
Jo, Sangjin
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)
title The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)
title_full The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)
title_fullStr The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)
title_full_unstemmed The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)
title_short The complete plastome sequence of the endangered orchid Kuhlhasseltia nakaiana (Orchidaceae)
title_sort complete plastome sequence of the endangered orchid kuhlhasseltia nakaiana (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799528/
https://www.ncbi.nlm.nih.gov/pubmed/33473952
http://dx.doi.org/10.1080/23802359.2017.1390408
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