The complete mitochondrial genome of the copepod Calanus glacialis

Calanus glacialis, a marine planktonic copepod, is a keystone species in the Arctic Ocean. In this study, we shotgun sequenced the total DNA of one C. glacialis individual, using the NextSeq(®) Illumina platform, in order to determine its mitochondrial genome sequence. We successfully assembled and...

Descripción completa

Detalles Bibliográficos
Autores principales: Choquet, Marvin, Alves Monteiro, Homère J., Bengtsson-Palme, Johan, Hoarau, Galice
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799568/
https://www.ncbi.nlm.nih.gov/pubmed/33473877
http://dx.doi.org/10.1080/23802359.2017.1361357
_version_ 1783635157549318144
author Choquet, Marvin
Alves Monteiro, Homère J.
Bengtsson-Palme, Johan
Hoarau, Galice
author_facet Choquet, Marvin
Alves Monteiro, Homère J.
Bengtsson-Palme, Johan
Hoarau, Galice
author_sort Choquet, Marvin
collection PubMed
description Calanus glacialis, a marine planktonic copepod, is a keystone species in the Arctic Ocean. In this study, we shotgun sequenced the total DNA of one C. glacialis individual, using the NextSeq(®) Illumina platform, in order to determine its mitochondrial genome sequence. We successfully assembled and annotated this 20,674 bp long sequence, which included 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. Common gene-coding regions of 19 other species were used to reconstruct a phylogenetic tree, using mitogenomes of the phylogenetically closest copepods available. The new resource described here constitutes a tool of interest for better understanding the structure and dynamics of C. glacialis populations.
format Online
Article
Text
id pubmed-7799568
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77995682021-01-19 The complete mitochondrial genome of the copepod Calanus glacialis Choquet, Marvin Alves Monteiro, Homère J. Bengtsson-Palme, Johan Hoarau, Galice Mitochondrial DNA B Resour Mitogenome Announcement Calanus glacialis, a marine planktonic copepod, is a keystone species in the Arctic Ocean. In this study, we shotgun sequenced the total DNA of one C. glacialis individual, using the NextSeq(®) Illumina platform, in order to determine its mitochondrial genome sequence. We successfully assembled and annotated this 20,674 bp long sequence, which included 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. Common gene-coding regions of 19 other species were used to reconstruct a phylogenetic tree, using mitogenomes of the phylogenetically closest copepods available. The new resource described here constitutes a tool of interest for better understanding the structure and dynamics of C. glacialis populations. Taylor & Francis 2017-08-06 /pmc/articles/PMC7799568/ /pubmed/33473877 http://dx.doi.org/10.1080/23802359.2017.1361357 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Choquet, Marvin
Alves Monteiro, Homère J.
Bengtsson-Palme, Johan
Hoarau, Galice
The complete mitochondrial genome of the copepod Calanus glacialis
title The complete mitochondrial genome of the copepod Calanus glacialis
title_full The complete mitochondrial genome of the copepod Calanus glacialis
title_fullStr The complete mitochondrial genome of the copepod Calanus glacialis
title_full_unstemmed The complete mitochondrial genome of the copepod Calanus glacialis
title_short The complete mitochondrial genome of the copepod Calanus glacialis
title_sort complete mitochondrial genome of the copepod calanus glacialis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799568/
https://www.ncbi.nlm.nih.gov/pubmed/33473877
http://dx.doi.org/10.1080/23802359.2017.1361357
work_keys_str_mv AT choquetmarvin thecompletemitochondrialgenomeofthecopepodcalanusglacialis
AT alvesmonteirohomerej thecompletemitochondrialgenomeofthecopepodcalanusglacialis
AT bengtssonpalmejohan thecompletemitochondrialgenomeofthecopepodcalanusglacialis
AT hoaraugalice thecompletemitochondrialgenomeofthecopepodcalanusglacialis
AT choquetmarvin completemitochondrialgenomeofthecopepodcalanusglacialis
AT alvesmonteirohomerej completemitochondrialgenomeofthecopepodcalanusglacialis
AT bengtssonpalmejohan completemitochondrialgenomeofthecopepodcalanusglacialis
AT hoaraugalice completemitochondrialgenomeofthecopepodcalanusglacialis

Ejemplares similares