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The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny

Vicia sepium L., as a pan-temperate species, it is suitable as a constituent part of grazed grasslands because it can be resistant to winter kill and it contains abundant proteins. In this study, complete chloroplast genome of V. sepium was explored and phylogenetic analysis was done. The result sho...

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Autores principales: Li, Chaoyang, Zhao, Yunlin, Huang, Huimin, Ding, Yi, Hu, Yinhui, Xu, Zhenggang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799580/
https://www.ncbi.nlm.nih.gov/pubmed/33474096
http://dx.doi.org/10.1080/23802359.2018.1431071
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author Li, Chaoyang
Zhao, Yunlin
Huang, Huimin
Ding, Yi
Hu, Yinhui
Xu, Zhenggang
author_facet Li, Chaoyang
Zhao, Yunlin
Huang, Huimin
Ding, Yi
Hu, Yinhui
Xu, Zhenggang
author_sort Li, Chaoyang
collection PubMed
description Vicia sepium L., as a pan-temperate species, it is suitable as a constituent part of grazed grasslands because it can be resistant to winter kill and it contains abundant proteins. In this study, complete chloroplast genome of V. sepium was explored and phylogenetic analysis was done. The result showed that the whole genome was 124,095 bp long with IR loss. The overall GC content was 35.03%. A total of 109 genes were identified, including 80 protein-coding, 30 transfer RNA, and four ribosome RNA genes. Similar to most of the IRLC plastoms, rpl22, rps16 and one intron of clpP were lost. The phylogenetic analysis of protein-coding genes from 25 Fabaceae species belonging to IRLC showed that V. sepium was similar to V. sativa. The chloroplast genome reported here will promote our understanding of the phylogeny and evolution of the genus Vicia.
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spelling pubmed-77995802021-01-19 The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny Li, Chaoyang Zhao, Yunlin Huang, Huimin Ding, Yi Hu, Yinhui Xu, Zhenggang Mitochondrial DNA B Resour Mitogenome Announcement Vicia sepium L., as a pan-temperate species, it is suitable as a constituent part of grazed grasslands because it can be resistant to winter kill and it contains abundant proteins. In this study, complete chloroplast genome of V. sepium was explored and phylogenetic analysis was done. The result showed that the whole genome was 124,095 bp long with IR loss. The overall GC content was 35.03%. A total of 109 genes were identified, including 80 protein-coding, 30 transfer RNA, and four ribosome RNA genes. Similar to most of the IRLC plastoms, rpl22, rps16 and one intron of clpP were lost. The phylogenetic analysis of protein-coding genes from 25 Fabaceae species belonging to IRLC showed that V. sepium was similar to V. sativa. The chloroplast genome reported here will promote our understanding of the phylogeny and evolution of the genus Vicia. Taylor & Francis 2018-01-24 /pmc/articles/PMC7799580/ /pubmed/33474096 http://dx.doi.org/10.1080/23802359.2018.1431071 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Chaoyang
Zhao, Yunlin
Huang, Huimin
Ding, Yi
Hu, Yinhui
Xu, Zhenggang
The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny
title The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny
title_full The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny
title_fullStr The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny
title_full_unstemmed The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny
title_short The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny
title_sort complete chloroplast genome of an inverted-repeat-lacking species, vicia sepium, and its phylogeny
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799580/
https://www.ncbi.nlm.nih.gov/pubmed/33474096
http://dx.doi.org/10.1080/23802359.2018.1431071
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