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The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny
Vicia sepium L., as a pan-temperate species, it is suitable as a constituent part of grazed grasslands because it can be resistant to winter kill and it contains abundant proteins. In this study, complete chloroplast genome of V. sepium was explored and phylogenetic analysis was done. The result sho...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799580/ https://www.ncbi.nlm.nih.gov/pubmed/33474096 http://dx.doi.org/10.1080/23802359.2018.1431071 |
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author | Li, Chaoyang Zhao, Yunlin Huang, Huimin Ding, Yi Hu, Yinhui Xu, Zhenggang |
author_facet | Li, Chaoyang Zhao, Yunlin Huang, Huimin Ding, Yi Hu, Yinhui Xu, Zhenggang |
author_sort | Li, Chaoyang |
collection | PubMed |
description | Vicia sepium L., as a pan-temperate species, it is suitable as a constituent part of grazed grasslands because it can be resistant to winter kill and it contains abundant proteins. In this study, complete chloroplast genome of V. sepium was explored and phylogenetic analysis was done. The result showed that the whole genome was 124,095 bp long with IR loss. The overall GC content was 35.03%. A total of 109 genes were identified, including 80 protein-coding, 30 transfer RNA, and four ribosome RNA genes. Similar to most of the IRLC plastoms, rpl22, rps16 and one intron of clpP were lost. The phylogenetic analysis of protein-coding genes from 25 Fabaceae species belonging to IRLC showed that V. sepium was similar to V. sativa. The chloroplast genome reported here will promote our understanding of the phylogeny and evolution of the genus Vicia. |
format | Online Article Text |
id | pubmed-7799580 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77995802021-01-19 The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny Li, Chaoyang Zhao, Yunlin Huang, Huimin Ding, Yi Hu, Yinhui Xu, Zhenggang Mitochondrial DNA B Resour Mitogenome Announcement Vicia sepium L., as a pan-temperate species, it is suitable as a constituent part of grazed grasslands because it can be resistant to winter kill and it contains abundant proteins. In this study, complete chloroplast genome of V. sepium was explored and phylogenetic analysis was done. The result showed that the whole genome was 124,095 bp long with IR loss. The overall GC content was 35.03%. A total of 109 genes were identified, including 80 protein-coding, 30 transfer RNA, and four ribosome RNA genes. Similar to most of the IRLC plastoms, rpl22, rps16 and one intron of clpP were lost. The phylogenetic analysis of protein-coding genes from 25 Fabaceae species belonging to IRLC showed that V. sepium was similar to V. sativa. The chloroplast genome reported here will promote our understanding of the phylogeny and evolution of the genus Vicia. Taylor & Francis 2018-01-24 /pmc/articles/PMC7799580/ /pubmed/33474096 http://dx.doi.org/10.1080/23802359.2018.1431071 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Li, Chaoyang Zhao, Yunlin Huang, Huimin Ding, Yi Hu, Yinhui Xu, Zhenggang The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny |
title | The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny |
title_full | The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny |
title_fullStr | The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny |
title_full_unstemmed | The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny |
title_short | The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny |
title_sort | complete chloroplast genome of an inverted-repeat-lacking species, vicia sepium, and its phylogeny |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799580/ https://www.ncbi.nlm.nih.gov/pubmed/33474096 http://dx.doi.org/10.1080/23802359.2018.1431071 |
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