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Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China

Erythropalum scandens (Erythropalaceae, Santalales) is a large liana distributed in alluvial and riparian forests of Southeast Asia. Here we report and characterize the complete plastid genome sequence of E. scandens in an effort to provide genomic resources useful for developing its medicinal and e...

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Autores principales: Zhu, Zhi-Xin, Wang, Jian-Hua, Cai, Ya-Cheng, Zhao, Kun-Kun, Moore, Michael J., Wang, Hua-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799593/
https://www.ncbi.nlm.nih.gov/pubmed/33474097
http://dx.doi.org/10.1080/23802359.2017.1413435
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author Zhu, Zhi-Xin
Wang, Jian-Hua
Cai, Ya-Cheng
Zhao, Kun-Kun
Moore, Michael J.
Wang, Hua-Feng
author_facet Zhu, Zhi-Xin
Wang, Jian-Hua
Cai, Ya-Cheng
Zhao, Kun-Kun
Moore, Michael J.
Wang, Hua-Feng
author_sort Zhu, Zhi-Xin
collection PubMed
description Erythropalum scandens (Erythropalaceae, Santalales) is a large liana distributed in alluvial and riparian forests of Southeast Asia. Here we report and characterize the complete plastid genome sequence of E. scandens in an effort to provide genomic resources useful for developing its medicinal and edible value. The complete plastome is 156,154 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,394 bp, a large single-copy (LSC) region of 84,799 bp and a small single-copy (SSC) region of 18,567 bp. The plastome contains 112 genes, consisting of 79 unique protein-coding genes, 29 unique tRNA genes and four unique rRNA genes. The overall A/T content in the plastome of E. scandens is 62.01%. Phylogenetic analyses were performed using the entire plastome, including genes, spacers and introns, which recovered E. scandens as sister to remaining Santalales with complete plastome sequences.
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spelling pubmed-77995932021-01-19 Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China Zhu, Zhi-Xin Wang, Jian-Hua Cai, Ya-Cheng Zhao, Kun-Kun Moore, Michael J. Wang, Hua-Feng Mitochondrial DNA B Resour Mitogenome Announcement Erythropalum scandens (Erythropalaceae, Santalales) is a large liana distributed in alluvial and riparian forests of Southeast Asia. Here we report and characterize the complete plastid genome sequence of E. scandens in an effort to provide genomic resources useful for developing its medicinal and edible value. The complete plastome is 156,154 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,394 bp, a large single-copy (LSC) region of 84,799 bp and a small single-copy (SSC) region of 18,567 bp. The plastome contains 112 genes, consisting of 79 unique protein-coding genes, 29 unique tRNA genes and four unique rRNA genes. The overall A/T content in the plastome of E. scandens is 62.01%. Phylogenetic analyses were performed using the entire plastome, including genes, spacers and introns, which recovered E. scandens as sister to remaining Santalales with complete plastome sequences. Taylor & Francis 2018-02-01 /pmc/articles/PMC7799593/ /pubmed/33474097 http://dx.doi.org/10.1080/23802359.2017.1413435 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhu, Zhi-Xin
Wang, Jian-Hua
Cai, Ya-Cheng
Zhao, Kun-Kun
Moore, Michael J.
Wang, Hua-Feng
Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China
title Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China
title_full Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China
title_fullStr Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China
title_full_unstemmed Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China
title_short Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China
title_sort complete plastome sequence of erythropalum scandens (erythropalaceae), an edible and medicinally important liana in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799593/
https://www.ncbi.nlm.nih.gov/pubmed/33474097
http://dx.doi.org/10.1080/23802359.2017.1413435
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