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Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China
Erythropalum scandens (Erythropalaceae, Santalales) is a large liana distributed in alluvial and riparian forests of Southeast Asia. Here we report and characterize the complete plastid genome sequence of E. scandens in an effort to provide genomic resources useful for developing its medicinal and e...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799593/ https://www.ncbi.nlm.nih.gov/pubmed/33474097 http://dx.doi.org/10.1080/23802359.2017.1413435 |
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author | Zhu, Zhi-Xin Wang, Jian-Hua Cai, Ya-Cheng Zhao, Kun-Kun Moore, Michael J. Wang, Hua-Feng |
author_facet | Zhu, Zhi-Xin Wang, Jian-Hua Cai, Ya-Cheng Zhao, Kun-Kun Moore, Michael J. Wang, Hua-Feng |
author_sort | Zhu, Zhi-Xin |
collection | PubMed |
description | Erythropalum scandens (Erythropalaceae, Santalales) is a large liana distributed in alluvial and riparian forests of Southeast Asia. Here we report and characterize the complete plastid genome sequence of E. scandens in an effort to provide genomic resources useful for developing its medicinal and edible value. The complete plastome is 156,154 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,394 bp, a large single-copy (LSC) region of 84,799 bp and a small single-copy (SSC) region of 18,567 bp. The plastome contains 112 genes, consisting of 79 unique protein-coding genes, 29 unique tRNA genes and four unique rRNA genes. The overall A/T content in the plastome of E. scandens is 62.01%. Phylogenetic analyses were performed using the entire plastome, including genes, spacers and introns, which recovered E. scandens as sister to remaining Santalales with complete plastome sequences. |
format | Online Article Text |
id | pubmed-7799593 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77995932021-01-19 Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China Zhu, Zhi-Xin Wang, Jian-Hua Cai, Ya-Cheng Zhao, Kun-Kun Moore, Michael J. Wang, Hua-Feng Mitochondrial DNA B Resour Mitogenome Announcement Erythropalum scandens (Erythropalaceae, Santalales) is a large liana distributed in alluvial and riparian forests of Southeast Asia. Here we report and characterize the complete plastid genome sequence of E. scandens in an effort to provide genomic resources useful for developing its medicinal and edible value. The complete plastome is 156,154 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,394 bp, a large single-copy (LSC) region of 84,799 bp and a small single-copy (SSC) region of 18,567 bp. The plastome contains 112 genes, consisting of 79 unique protein-coding genes, 29 unique tRNA genes and four unique rRNA genes. The overall A/T content in the plastome of E. scandens is 62.01%. Phylogenetic analyses were performed using the entire plastome, including genes, spacers and introns, which recovered E. scandens as sister to remaining Santalales with complete plastome sequences. Taylor & Francis 2018-02-01 /pmc/articles/PMC7799593/ /pubmed/33474097 http://dx.doi.org/10.1080/23802359.2017.1413435 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Zhu, Zhi-Xin Wang, Jian-Hua Cai, Ya-Cheng Zhao, Kun-Kun Moore, Michael J. Wang, Hua-Feng Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China |
title | Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China |
title_full | Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China |
title_fullStr | Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China |
title_full_unstemmed | Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China |
title_short | Complete plastome sequence of Erythropalum scandens (Erythropalaceae), an edible and medicinally important liana in China |
title_sort | complete plastome sequence of erythropalum scandens (erythropalaceae), an edible and medicinally important liana in china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799593/ https://www.ncbi.nlm.nih.gov/pubmed/33474097 http://dx.doi.org/10.1080/23802359.2017.1413435 |
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