Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)

The two-spot swimming crab Charybdis bimaculata (Miers, 1886) is an important decapod species in the benthic ecosystem of Korean waters. In this study, we determined its complete mitochondrial genome by the combination of NGS analysis using MiSeq platform and PCR-based cloning method. The circular m...

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Autores principales: Kim, Nack-Keun, Andriyono, Sapto, Kim, Ah Ran, Lee, Chung Il, Kim, Hyun-Woo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799594/
https://www.ncbi.nlm.nih.gov/pubmed/33474358
http://dx.doi.org/10.1080/23802359.2018.1501292
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author Kim, Nack-Keun
Andriyono, Sapto
Kim, Ah Ran
Lee, Chung Il
Kim, Hyun-Woo
author_facet Kim, Nack-Keun
Andriyono, Sapto
Kim, Ah Ran
Lee, Chung Il
Kim, Hyun-Woo
author_sort Kim, Nack-Keun
collection PubMed
description The two-spot swimming crab Charybdis bimaculata (Miers, 1886) is an important decapod species in the benthic ecosystem of Korean waters. In this study, we determined its complete mitochondrial genome by the combination of NGS analysis using MiSeq platform and PCR-based cloning method. The circular mitochondrial genome of C. bimaculata was 15,714 bp in length in which the standard set of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes were encoded. Phylogenic analysis showed that C.bimaculata is most closely related to Charybdis feriata. The complete mitogenome sequence information of C. bimaculata would provide useful data for the conservation of their population in the Pacific ocean.
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spelling pubmed-77995942021-01-19 Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886) Kim, Nack-Keun Andriyono, Sapto Kim, Ah Ran Lee, Chung Il Kim, Hyun-Woo Mitochondrial DNA B Resour Mitogenome Announcement The two-spot swimming crab Charybdis bimaculata (Miers, 1886) is an important decapod species in the benthic ecosystem of Korean waters. In this study, we determined its complete mitochondrial genome by the combination of NGS analysis using MiSeq platform and PCR-based cloning method. The circular mitochondrial genome of C. bimaculata was 15,714 bp in length in which the standard set of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes were encoded. Phylogenic analysis showed that C.bimaculata is most closely related to Charybdis feriata. The complete mitogenome sequence information of C. bimaculata would provide useful data for the conservation of their population in the Pacific ocean. Taylor & Francis 2018-08-17 /pmc/articles/PMC7799594/ /pubmed/33474358 http://dx.doi.org/10.1080/23802359.2018.1501292 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Kim, Nack-Keun
Andriyono, Sapto
Kim, Ah Ran
Lee, Chung Il
Kim, Hyun-Woo
Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)
title Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)
title_full Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)
title_fullStr Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)
title_full_unstemmed Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)
title_short Characterization of complete mitochondrial genome of two-spot swimming crab Charybdis bimaculata (Miers, 1886)
title_sort characterization of complete mitochondrial genome of two-spot swimming crab charybdis bimaculata (miers, 1886)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799594/
https://www.ncbi.nlm.nih.gov/pubmed/33474358
http://dx.doi.org/10.1080/23802359.2018.1501292
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