Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis

In this study, the complete mitogenome of Charybdis bimaculata was sequenced and annotated. The mitogenome is 15,441 bp in length, containing 37 classical eukaryotic mitochondrial regions (13 typical protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes) and a non-coding control region. Most of...

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Autores principales: Liu, Xue, Yuan, YiMing, He, YanLong, Liu, ShouHai, Ji, Xiao, Qin, YuTao, Ma, KeYi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799625/
https://www.ncbi.nlm.nih.gov/pubmed/33474452
http://dx.doi.org/10.1080/23802359.2018.1524273
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author Liu, Xue
Yuan, YiMing
He, YanLong
Liu, ShouHai
Ji, Xiao
Qin, YuTao
Ma, KeYi
author_facet Liu, Xue
Yuan, YiMing
He, YanLong
Liu, ShouHai
Ji, Xiao
Qin, YuTao
Ma, KeYi
author_sort Liu, Xue
collection PubMed
description In this study, the complete mitogenome of Charybdis bimaculata was sequenced and annotated. The mitogenome is 15,441 bp in length, containing 37 classical eukaryotic mitochondrial regions (13 typical protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes) and a non-coding control region. Most of the genes are initiated with ATA, ATG, and ATT, though GTG is also used as an initiation codon. Twelve PCGs stop with complete termination codon TAA and TAG, while Cob uses incomplete codon (T–). The phylogenetic relationships based on 13 PCGs show that C. bimaculata clusters closest to C. fariata and C. natator.
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spelling pubmed-77996252021-01-19 Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis Liu, Xue Yuan, YiMing He, YanLong Liu, ShouHai Ji, Xiao Qin, YuTao Ma, KeYi Mitochondrial DNA B Resour Mitogenome Announcement In this study, the complete mitogenome of Charybdis bimaculata was sequenced and annotated. The mitogenome is 15,441 bp in length, containing 37 classical eukaryotic mitochondrial regions (13 typical protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes) and a non-coding control region. Most of the genes are initiated with ATA, ATG, and ATT, though GTG is also used as an initiation codon. Twelve PCGs stop with complete termination codon TAA and TAG, while Cob uses incomplete codon (T–). The phylogenetic relationships based on 13 PCGs show that C. bimaculata clusters closest to C. fariata and C. natator. Taylor & Francis 2018-10-05 /pmc/articles/PMC7799625/ /pubmed/33474452 http://dx.doi.org/10.1080/23802359.2018.1524273 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Liu, Xue
Yuan, YiMing
He, YanLong
Liu, ShouHai
Ji, Xiao
Qin, YuTao
Ma, KeYi
Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis
title Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis
title_full Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis
title_fullStr Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis
title_full_unstemmed Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis
title_short Characterization of the complete mitochondrial genome sequence of Charybdis bimaculata and phylogenetic analysis
title_sort characterization of the complete mitochondrial genome sequence of charybdis bimaculata and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799625/
https://www.ncbi.nlm.nih.gov/pubmed/33474452
http://dx.doi.org/10.1080/23802359.2018.1524273
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