Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus

Chloroplast genomes are widely used in genetic engineering, molecular marker development, and phylogeny. In order to analyze the complete chloroplast genome of Dianthus caryophyllus, the complete chloroplast genome of D. caryophyllus was sequenced and annotated. On the other hand, phylogenetic analy...

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Autores principales: Chen, Shuwen, Xu, Zhenggang, Zhao, Yunlin, Zhong, Xiaofen, Li, Chaoyang, Yang, Guiyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799632/
https://www.ncbi.nlm.nih.gov/pubmed/33474443
http://dx.doi.org/10.1080/23802359.2018.1521313
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author Chen, Shuwen
Xu, Zhenggang
Zhao, Yunlin
Zhong, Xiaofen
Li, Chaoyang
Yang, Guiyan
author_facet Chen, Shuwen
Xu, Zhenggang
Zhao, Yunlin
Zhong, Xiaofen
Li, Chaoyang
Yang, Guiyan
author_sort Chen, Shuwen
collection PubMed
description Chloroplast genomes are widely used in genetic engineering, molecular marker development, and phylogeny. In order to analyze the complete chloroplast genome of Dianthus caryophyllus, the complete chloroplast genome of D. caryophyllus was sequenced and annotated. On the other hand, phylogenetic analysis of the chloroplast genome of D. caryophyllus was carried out. The results showed that the whole length of the chloroplast genome of D. caryophyllus was 147,604 bp, and had a typical conserved quadripartite structure. The G and C basic content of D. caryophyllus chloroplast was 36.3%. The genome contained 83 protein-coding genes, 34 tRNA genes, and 6 rRNA genes. Among the protein-coding genes, 10 genes contain a single intron and 2 genes contain two introns. The phylogeny of D. caryophyllus indicated that the closest phylogenetic relationship was D. longicalyxanus. This study provides materials for the molecular study of D. caryophyllus may improve the carnation industry.
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spelling pubmed-77996322021-01-19 Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus Chen, Shuwen Xu, Zhenggang Zhao, Yunlin Zhong, Xiaofen Li, Chaoyang Yang, Guiyan Mitochondrial DNA B Resour Mitogenome Announcement Chloroplast genomes are widely used in genetic engineering, molecular marker development, and phylogeny. In order to analyze the complete chloroplast genome of Dianthus caryophyllus, the complete chloroplast genome of D. caryophyllus was sequenced and annotated. On the other hand, phylogenetic analysis of the chloroplast genome of D. caryophyllus was carried out. The results showed that the whole length of the chloroplast genome of D. caryophyllus was 147,604 bp, and had a typical conserved quadripartite structure. The G and C basic content of D. caryophyllus chloroplast was 36.3%. The genome contained 83 protein-coding genes, 34 tRNA genes, and 6 rRNA genes. Among the protein-coding genes, 10 genes contain a single intron and 2 genes contain two introns. The phylogeny of D. caryophyllus indicated that the closest phylogenetic relationship was D. longicalyxanus. This study provides materials for the molecular study of D. caryophyllus may improve the carnation industry. Taylor & Francis 2018-10-08 /pmc/articles/PMC7799632/ /pubmed/33474443 http://dx.doi.org/10.1080/23802359.2018.1521313 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chen, Shuwen
Xu, Zhenggang
Zhao, Yunlin
Zhong, Xiaofen
Li, Chaoyang
Yang, Guiyan
Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus
title Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus
title_full Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus
title_fullStr Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus
title_full_unstemmed Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus
title_short Structural characteristic and phylogenetic analysis of the complete chloroplast genome of Dianthus Caryophyllus
title_sort structural characteristic and phylogenetic analysis of the complete chloroplast genome of dianthus caryophyllus
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799632/
https://www.ncbi.nlm.nih.gov/pubmed/33474443
http://dx.doi.org/10.1080/23802359.2018.1521313
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