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Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes
In our research, 17 sets of primers were used to amplify contiguous, overlapping segments of the complete mitochondrial DNA (mtDNA) of the Tylosurus acus melanotus in order to analyse the inheritance and evolutionary relationship of this species. The total length of the mitochondrial genome is 16,72...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799640/ https://www.ncbi.nlm.nih.gov/pubmed/33473526 http://dx.doi.org/10.1080/23802359.2016.1180551 |
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author | Zhang, Hong Zeng, Da Xu, Youhou Zhang, Yanqiu Fang, Huaiyi Xu, Lili Gong, Bin |
author_facet | Zhang, Hong Zeng, Da Xu, Youhou Zhang, Yanqiu Fang, Huaiyi Xu, Lili Gong, Bin |
author_sort | Zhang, Hong |
collection | PubMed |
description | In our research, 17 sets of primers were used to amplify contiguous, overlapping segments of the complete mitochondrial DNA (mtDNA) of the Tylosurus acus melanotus in order to analyse the inheritance and evolutionary relationship of this species. The total length of the mitochondrial genome is 16,723 bp and deposited in the GenBank with accession numbers KU605633. The gene arrangement was similar to other bony fishes which contained 37 genes (13 protein-coding genes, 2 ribosomal RNA and 22 transfer RNAs) and a major non-coding control region. Most genes were encoded on the H-strand, except for the ND6 and 8 tRNA genes, encoding on the L-strand. The mtDNA may provide some important genetic background information for this valuable fish. The nucleotide skewness for the coding strands of T. acus melanotus (GC-skew = −0.21) is biased towards G and the negative GC-skew ranges from -0.53(ATP8) to -0.12(CO2) and the AT-Skew showed more positive varying from −0.17(ND3) to 0.26(ATP6). The phylogenetic analysis demonstrated that T. acus melanotus was clustered together with Ablennes hians, but far away from Cololabis saira which belongs to Beloniformes, Belonidae. |
format | Online Article Text |
id | pubmed-7799640 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77996402021-01-19 Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes Zhang, Hong Zeng, Da Xu, Youhou Zhang, Yanqiu Fang, Huaiyi Xu, Lili Gong, Bin Mitochondrial DNA B Resour Mitogenome Announcement In our research, 17 sets of primers were used to amplify contiguous, overlapping segments of the complete mitochondrial DNA (mtDNA) of the Tylosurus acus melanotus in order to analyse the inheritance and evolutionary relationship of this species. The total length of the mitochondrial genome is 16,723 bp and deposited in the GenBank with accession numbers KU605633. The gene arrangement was similar to other bony fishes which contained 37 genes (13 protein-coding genes, 2 ribosomal RNA and 22 transfer RNAs) and a major non-coding control region. Most genes were encoded on the H-strand, except for the ND6 and 8 tRNA genes, encoding on the L-strand. The mtDNA may provide some important genetic background information for this valuable fish. The nucleotide skewness for the coding strands of T. acus melanotus (GC-skew = −0.21) is biased towards G and the negative GC-skew ranges from -0.53(ATP8) to -0.12(CO2) and the AT-Skew showed more positive varying from −0.17(ND3) to 0.26(ATP6). The phylogenetic analysis demonstrated that T. acus melanotus was clustered together with Ablennes hians, but far away from Cololabis saira which belongs to Beloniformes, Belonidae. Taylor & Francis 2016-07-10 /pmc/articles/PMC7799640/ /pubmed/33473526 http://dx.doi.org/10.1080/23802359.2016.1180551 Text en © 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Zhang, Hong Zeng, Da Xu, Youhou Zhang, Yanqiu Fang, Huaiyi Xu, Lili Gong, Bin Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes |
title | Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes |
title_full | Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes |
title_fullStr | Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes |
title_full_unstemmed | Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes |
title_short | Inheritance and phylogenetic analysis of Tylosurus acus melanotus based on the complete mitochondrial genomes |
title_sort | inheritance and phylogenetic analysis of tylosurus acus melanotus based on the complete mitochondrial genomes |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799640/ https://www.ncbi.nlm.nih.gov/pubmed/33473526 http://dx.doi.org/10.1080/23802359.2016.1180551 |
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