The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China

Gymnospermium kiangnanense is an endangered species in the family Berberidaceae. In this study, we assembled the chloroplast (cp) genome of G. kiangnanense and reconstructed the phylogenetic tree of Berberidaceae based on the complete cp genome. The cp genome of G. kiangnanense is 160,136 bp in leng...

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Autores principales: Yang, Zhaoping, Peng, Zhengkang, Zhang, Hongwei, Lee, Joongku, Liu, Xuelian, Fu, Chengxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799652/
https://www.ncbi.nlm.nih.gov/pubmed/33474293
http://dx.doi.org/10.1080/23802359.2018.1483760
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author Yang, Zhaoping
Peng, Zhengkang
Zhang, Hongwei
Lee, Joongku
Liu, Xuelian
Fu, Chengxin
author_facet Yang, Zhaoping
Peng, Zhengkang
Zhang, Hongwei
Lee, Joongku
Liu, Xuelian
Fu, Chengxin
author_sort Yang, Zhaoping
collection PubMed
description Gymnospermium kiangnanense is an endangered species in the family Berberidaceae. In this study, we assembled the chloroplast (cp) genome of G. kiangnanense and reconstructed the phylogenetic tree of Berberidaceae based on the complete cp genome. The cp genome of G. kiangnanense is 160,136 bp in length, comprising a pair of inverted repeat (IR) regions (26,424 bp) separated by a large single-copy (LSC) region (87,580 bp) and a small single-copy (SSC) region (19,708bp). The genome encodes 111 unique genes, consisting of 77 different protein-coding genes, 30 transfer RNA, and 4 ribosomal RNA genes, with 18 duplicated genes in the inverted repeats. Phylogenetic analysis indicates that G. kiangnanense is sister to G. microrrhynchum, and the Gymnospermium clade is closely related with Nandina.
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spelling pubmed-77996522021-01-19 The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China Yang, Zhaoping Peng, Zhengkang Zhang, Hongwei Lee, Joongku Liu, Xuelian Fu, Chengxin Mitochondrial DNA B Resour Mitogenome Announcement Gymnospermium kiangnanense is an endangered species in the family Berberidaceae. In this study, we assembled the chloroplast (cp) genome of G. kiangnanense and reconstructed the phylogenetic tree of Berberidaceae based on the complete cp genome. The cp genome of G. kiangnanense is 160,136 bp in length, comprising a pair of inverted repeat (IR) regions (26,424 bp) separated by a large single-copy (LSC) region (87,580 bp) and a small single-copy (SSC) region (19,708bp). The genome encodes 111 unique genes, consisting of 77 different protein-coding genes, 30 transfer RNA, and 4 ribosomal RNA genes, with 18 duplicated genes in the inverted repeats. Phylogenetic analysis indicates that G. kiangnanense is sister to G. microrrhynchum, and the Gymnospermium clade is closely related with Nandina. Taylor & Francis 2018-07-03 /pmc/articles/PMC7799652/ /pubmed/33474293 http://dx.doi.org/10.1080/23802359.2018.1483760 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Yang, Zhaoping
Peng, Zhengkang
Zhang, Hongwei
Lee, Joongku
Liu, Xuelian
Fu, Chengxin
The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China
title The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China
title_full The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China
title_fullStr The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China
title_full_unstemmed The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China
title_short The complete chloroplast genome of Gymnospermium kiangnanense (Berberidaceae): an endangered species endemic to Eastern China
title_sort complete chloroplast genome of gymnospermium kiangnanense (berberidaceae): an endangered species endemic to eastern china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799652/
https://www.ncbi.nlm.nih.gov/pubmed/33474293
http://dx.doi.org/10.1080/23802359.2018.1483760
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