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Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration

Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evoluti...

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Autores principales: Song, Wei, Li, Lingzhi, Huang, Hongliang, Chen, Fenfang, Zhao, Ming, Jiang, Keji, Zhang, Fengying, Ma, Chunyan, Chen, Xuezhong, Ma, Lingbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799673/
https://www.ncbi.nlm.nih.gov/pubmed/33473885
http://dx.doi.org/10.1080/23802359.2017.1361361
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author Song, Wei
Li, Lingzhi
Huang, Hongliang
Chen, Fenfang
Zhao, Ming
Jiang, Keji
Zhang, Fengying
Ma, Chunyan
Chen, Xuezhong
Ma, Lingbo
author_facet Song, Wei
Li, Lingzhi
Huang, Hongliang
Chen, Fenfang
Zhao, Ming
Jiang, Keji
Zhang, Fengying
Ma, Chunyan
Chen, Xuezhong
Ma, Lingbo
author_sort Song, Wei
collection PubMed
description Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evolution in mitochondrion. In this study, we first isolated and characterized the mitochondrial genome sequence of G. acuticeps with 15,987 bp in length. It contained of 34 genes (12 protein-coding genes, 20 transfer RNA genes, 2 ribosomal RNA genes) and a partial putative control region. Gene organization and nucleotide composition of obtained mito-genome were similar to those of other Antarctic fish. Twenty-eight genes were encoded by heavy strand, while six genes were encoded by light strand. Further, the phylogenetic tree, which based on 12 protein-coding genes, revealed that the G. acuticeps was genetically closest to species Parachaenichthys charcoti among 18 species. We hope this work would be helpful for the population genetics and molecular evolution studies.
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spelling pubmed-77996732021-01-19 Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration Song, Wei Li, Lingzhi Huang, Hongliang Chen, Fenfang Zhao, Ming Jiang, Keji Zhang, Fengying Ma, Chunyan Chen, Xuezhong Ma, Lingbo Mitochondrial DNA B Resour Mitogenome Announcement Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evolution in mitochondrion. In this study, we first isolated and characterized the mitochondrial genome sequence of G. acuticeps with 15,987 bp in length. It contained of 34 genes (12 protein-coding genes, 20 transfer RNA genes, 2 ribosomal RNA genes) and a partial putative control region. Gene organization and nucleotide composition of obtained mito-genome were similar to those of other Antarctic fish. Twenty-eight genes were encoded by heavy strand, while six genes were encoded by light strand. Further, the phylogenetic tree, which based on 12 protein-coding genes, revealed that the G. acuticeps was genetically closest to species Parachaenichthys charcoti among 18 species. We hope this work would be helpful for the population genetics and molecular evolution studies. Taylor & Francis 2017-08-16 /pmc/articles/PMC7799673/ /pubmed/33473885 http://dx.doi.org/10.1080/23802359.2017.1361361 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Song, Wei
Li, Lingzhi
Huang, Hongliang
Chen, Fenfang
Zhao, Ming
Jiang, Keji
Zhang, Fengying
Ma, Chunyan
Chen, Xuezhong
Ma, Lingbo
Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration
title Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration
title_full Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration
title_fullStr Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration
title_full_unstemmed Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration
title_short Isolation and characterization of the mitochondrial genome of Gymnodraco acuticeps (Perciformes: Bathydraconidae) with phylogenetic consideration
title_sort isolation and characterization of the mitochondrial genome of gymnodraco acuticeps (perciformes: bathydraconidae) with phylogenetic consideration
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799673/
https://www.ncbi.nlm.nih.gov/pubmed/33473885
http://dx.doi.org/10.1080/23802359.2017.1361361
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