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Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae)
The complete DNA sequence of the mitochondrial genome of the bullsnake (Pituophis catenifer sayi) is presented and analyzed in this study. The genome is 17,193 bp in length, and contains 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes and 2 control regions. The overall base com...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799706/ https://www.ncbi.nlm.nih.gov/pubmed/33473529 http://dx.doi.org/10.1080/23802359.2016.1192497 |
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author | Lele, Abhimanyu Rand, Matthew S. Zweifel, Stephan G. |
author_facet | Lele, Abhimanyu Rand, Matthew S. Zweifel, Stephan G. |
author_sort | Lele, Abhimanyu |
collection | PubMed |
description | The complete DNA sequence of the mitochondrial genome of the bullsnake (Pituophis catenifer sayi) is presented and analyzed in this study. The genome is 17,193 bp in length, and contains 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes and 2 control regions. The overall base composition of the H-strand is A (34.5%), T (26.2%), C (25.8%) and G (12.7%). The gene order and orientation of the mitogenome is consistent with other sequenced genomes from colubrid snakes. Phylogenetic analyses using the ML, NJ and MP methods for a set of colubrids, including every sequenced genus within the sub-family Colubrinae, produced identical trees. We show that Pituophis is most closely related to the American ratsnake genus Pantherophis. |
format | Online Article Text |
id | pubmed-7799706 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77997062021-01-19 Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae) Lele, Abhimanyu Rand, Matthew S. Zweifel, Stephan G. Mitochondrial DNA B Resour Mitogenome Announcement The complete DNA sequence of the mitochondrial genome of the bullsnake (Pituophis catenifer sayi) is presented and analyzed in this study. The genome is 17,193 bp in length, and contains 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes and 2 control regions. The overall base composition of the H-strand is A (34.5%), T (26.2%), C (25.8%) and G (12.7%). The gene order and orientation of the mitogenome is consistent with other sequenced genomes from colubrid snakes. Phylogenetic analyses using the ML, NJ and MP methods for a set of colubrids, including every sequenced genus within the sub-family Colubrinae, produced identical trees. We show that Pituophis is most closely related to the American ratsnake genus Pantherophis. Taylor & Francis 2016-07-10 /pmc/articles/PMC7799706/ /pubmed/33473529 http://dx.doi.org/10.1080/23802359.2016.1192497 Text en © 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Lele, Abhimanyu Rand, Matthew S. Zweifel, Stephan G. Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae) |
title | Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae) |
title_full | Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae) |
title_fullStr | Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae) |
title_full_unstemmed | Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae) |
title_short | Sequencing and analysis of the mitochondrial genome of Pituophis catenifer sayi (Squamata: Colubridae) |
title_sort | sequencing and analysis of the mitochondrial genome of pituophis catenifer sayi (squamata: colubridae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799706/ https://www.ncbi.nlm.nih.gov/pubmed/33473529 http://dx.doi.org/10.1080/23802359.2016.1192497 |
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