The complete chloroplast genome of Caltha Palustris (Ranunculaceae)

The complete chloroplast genome sequence of Caltha palustris, a species of the Ranunculaceae family, was characterized from the de novo assembly of HiSeq (Illumina Co.) paired-end sequencing data. The chloroplast genome of C. palustris was 155,292 bp in length, with a large single-copy (LSC) region...

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Autores principales: Lee, Junki, Kim, Yoojin, Chun, Hyang Sook, Kwon, Kisung, Koh, Youngho, Kang, Tae Sun, Kang, Jung-Hwa, Kim, Eun-Jeong, Nah, Gyoungju
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799707/
https://www.ncbi.nlm.nih.gov/pubmed/33474427
http://dx.doi.org/10.1080/23802359.2018.1508383
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author Lee, Junki
Kim, Yoojin
Chun, Hyang Sook
Kwon, Kisung
Koh, Youngho
Kang, Tae Sun
Kang, Jung-Hwa
Kim, Eun-Jeong
Nah, Gyoungju
author_facet Lee, Junki
Kim, Yoojin
Chun, Hyang Sook
Kwon, Kisung
Koh, Youngho
Kang, Tae Sun
Kang, Jung-Hwa
Kim, Eun-Jeong
Nah, Gyoungju
author_sort Lee, Junki
collection PubMed
description The complete chloroplast genome sequence of Caltha palustris, a species of the Ranunculaceae family, was characterized from the de novo assembly of HiSeq (Illumina Co.) paired-end sequencing data. The chloroplast genome of C. palustris was 155,292 bp in length, with a large single-copy (LSC) region of 84,120 bp, a small single-copy (SSC) region of 18,342 bp, and a pair of identical inverted repeat regions (IRs) of 26,415 bp. The genome contained a total of 114 genes, including 80 protein-coding genes, 30 transfer RNA (tRNA) genes, and 4 ribosomal RNA (rRNA) genes. The phylogenetic analysis of C. palustris with 14 related species revealed the closest taxonomical relationship with Hydrastis canadensis in the Ranunculaceae family.
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spelling pubmed-77997072021-01-19 The complete chloroplast genome of Caltha Palustris (Ranunculaceae) Lee, Junki Kim, Yoojin Chun, Hyang Sook Kwon, Kisung Koh, Youngho Kang, Tae Sun Kang, Jung-Hwa Kim, Eun-Jeong Nah, Gyoungju Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Caltha palustris, a species of the Ranunculaceae family, was characterized from the de novo assembly of HiSeq (Illumina Co.) paired-end sequencing data. The chloroplast genome of C. palustris was 155,292 bp in length, with a large single-copy (LSC) region of 84,120 bp, a small single-copy (SSC) region of 18,342 bp, and a pair of identical inverted repeat regions (IRs) of 26,415 bp. The genome contained a total of 114 genes, including 80 protein-coding genes, 30 transfer RNA (tRNA) genes, and 4 ribosomal RNA (rRNA) genes. The phylogenetic analysis of C. palustris with 14 related species revealed the closest taxonomical relationship with Hydrastis canadensis in the Ranunculaceae family. Taylor & Francis 2018-10-03 /pmc/articles/PMC7799707/ /pubmed/33474427 http://dx.doi.org/10.1080/23802359.2018.1508383 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lee, Junki
Kim, Yoojin
Chun, Hyang Sook
Kwon, Kisung
Koh, Youngho
Kang, Tae Sun
Kang, Jung-Hwa
Kim, Eun-Jeong
Nah, Gyoungju
The complete chloroplast genome of Caltha Palustris (Ranunculaceae)
title The complete chloroplast genome of Caltha Palustris (Ranunculaceae)
title_full The complete chloroplast genome of Caltha Palustris (Ranunculaceae)
title_fullStr The complete chloroplast genome of Caltha Palustris (Ranunculaceae)
title_full_unstemmed The complete chloroplast genome of Caltha Palustris (Ranunculaceae)
title_short The complete chloroplast genome of Caltha Palustris (Ranunculaceae)
title_sort complete chloroplast genome of caltha palustris (ranunculaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799707/
https://www.ncbi.nlm.nih.gov/pubmed/33474427
http://dx.doi.org/10.1080/23802359.2018.1508383
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