Cargando…

The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae)

The complete mitochondrial genome sequence of Scythropus yasumatsui (Coleoptera: Curculionidae) was determined by using an Illumina platform. The circular genome was 16,472 bp in length and contained 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), 13 protein-coding genes (PCGs), and...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Feng, Hong, Bo, Chen, Zhi-Jie, Wang, Yuan-Zheng, Li, Ying-Mei, Zhang, Shu-Lian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799709/
https://www.ncbi.nlm.nih.gov/pubmed/33473958
http://dx.doi.org/10.1080/23802359.2017.1390413
_version_ 1783635188736065536
author Zhang, Feng
Hong, Bo
Chen, Zhi-Jie
Wang, Yuan-Zheng
Li, Ying-Mei
Zhang, Shu-Lian
author_facet Zhang, Feng
Hong, Bo
Chen, Zhi-Jie
Wang, Yuan-Zheng
Li, Ying-Mei
Zhang, Shu-Lian
author_sort Zhang, Feng
collection PubMed
description The complete mitochondrial genome sequence of Scythropus yasumatsui (Coleoptera: Curculionidae) was determined by using an Illumina platform. The circular genome was 16,472 bp in length and contained 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), 13 protein-coding genes (PCGs), and one control region. The nucleotide composition was significantly biased (A, G, C, and T was 39.74%, 10.11%, 15.41%, and 34.74%, respectively) with A + T contents of 74.49%. All PCGs were initiated with standard ATN (ATG/ATT) codons. While 10 PCGs were terminated with TAA, two PCGs were terminated with TAG (cytb and nad1), and nad5 was terminated with an incomplete stop codon TA. All tRNAs were predicted to contain typical cloverleaf secondary structures except trnS1. The phylogenetic analysis of the concatenated nucleotide sequences of 13 PCGs from 12 Curculionidae species was performed by using MrBayes 3.1.2. The results indicated that S. yasumatsui was more closely related to Naupactus xanthographus than to other species.
format Online
Article
Text
id pubmed-7799709
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77997092021-01-19 The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae) Zhang, Feng Hong, Bo Chen, Zhi-Jie Wang, Yuan-Zheng Li, Ying-Mei Zhang, Shu-Lian Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome sequence of Scythropus yasumatsui (Coleoptera: Curculionidae) was determined by using an Illumina platform. The circular genome was 16,472 bp in length and contained 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), 13 protein-coding genes (PCGs), and one control region. The nucleotide composition was significantly biased (A, G, C, and T was 39.74%, 10.11%, 15.41%, and 34.74%, respectively) with A + T contents of 74.49%. All PCGs were initiated with standard ATN (ATG/ATT) codons. While 10 PCGs were terminated with TAA, two PCGs were terminated with TAG (cytb and nad1), and nad5 was terminated with an incomplete stop codon TA. All tRNAs were predicted to contain typical cloverleaf secondary structures except trnS1. The phylogenetic analysis of the concatenated nucleotide sequences of 13 PCGs from 12 Curculionidae species was performed by using MrBayes 3.1.2. The results indicated that S. yasumatsui was more closely related to Naupactus xanthographus than to other species. Taylor & Francis 2017-10-17 /pmc/articles/PMC7799709/ /pubmed/33473958 http://dx.doi.org/10.1080/23802359.2017.1390413 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhang, Feng
Hong, Bo
Chen, Zhi-Jie
Wang, Yuan-Zheng
Li, Ying-Mei
Zhang, Shu-Lian
The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae)
title The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae)
title_full The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae)
title_fullStr The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae)
title_full_unstemmed The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae)
title_short The complete mitochondrial genome of Scythropus yasumatsui (Coleoptera: Curculionidae)
title_sort complete mitochondrial genome of scythropus yasumatsui (coleoptera: curculionidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799709/
https://www.ncbi.nlm.nih.gov/pubmed/33473958
http://dx.doi.org/10.1080/23802359.2017.1390413
work_keys_str_mv AT zhangfeng thecompletemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT hongbo thecompletemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT chenzhijie thecompletemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT wangyuanzheng thecompletemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT liyingmei thecompletemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT zhangshulian thecompletemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT zhangfeng completemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT hongbo completemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT chenzhijie completemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT wangyuanzheng completemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT liyingmei completemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae
AT zhangshulian completemitochondrialgenomeofscythropusyasumatsuicoleopteracurculionidae