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The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H....
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799732/ https://www.ncbi.nlm.nih.gov/pubmed/33474411 http://dx.doi.org/10.1080/23802359.2018.1511858 |
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author | Jang, Yeeun Park, Jee Young Kang, Shin-Jae Park, Hyun-Seung Shim, Hyeonah Lee, Taek Joo Kang, Jung Hwa Sung, Sang Hyun Yang, Tae-Jin |
author_facet | Jang, Yeeun Park, Jee Young Kang, Shin-Jae Park, Hyun-Seung Shim, Hyeonah Lee, Taek Joo Kang, Jung Hwa Sung, Sang Hyun Yang, Tae-Jin |
author_sort | Jang, Yeeun |
collection | PubMed |
description | Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them. |
format | Online Article Text |
id | pubmed-7799732 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77997322021-01-19 The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) Jang, Yeeun Park, Jee Young Kang, Shin-Jae Park, Hyun-Seung Shim, Hyeonah Lee, Taek Joo Kang, Jung Hwa Sung, Sang Hyun Yang, Tae-Jin Mitochondrial DNA B Resour Mitogenome Announcement Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them. Taylor & Francis 2018-10-08 /pmc/articles/PMC7799732/ /pubmed/33474411 http://dx.doi.org/10.1080/23802359.2018.1511858 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Jang, Yeeun Park, Jee Young Kang, Shin-Jae Park, Hyun-Seung Shim, Hyeonah Lee, Taek Joo Kang, Jung Hwa Sung, Sang Hyun Yang, Tae-Jin The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) |
title | The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) |
title_full | The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) |
title_fullStr | The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) |
title_short | The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) |
title_sort | complete chloroplast genome sequence of hosta capitata (koidz.) nakai (asparagaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799732/ https://www.ncbi.nlm.nih.gov/pubmed/33474411 http://dx.doi.org/10.1080/23802359.2018.1511858 |
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