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The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)

Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H....

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Autores principales: Jang, Yeeun, Park, Jee Young, Kang, Shin-Jae, Park, Hyun-Seung, Shim, Hyeonah, Lee, Taek Joo, Kang, Jung Hwa, Sung, Sang Hyun, Yang, Tae-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799732/
https://www.ncbi.nlm.nih.gov/pubmed/33474411
http://dx.doi.org/10.1080/23802359.2018.1511858
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author Jang, Yeeun
Park, Jee Young
Kang, Shin-Jae
Park, Hyun-Seung
Shim, Hyeonah
Lee, Taek Joo
Kang, Jung Hwa
Sung, Sang Hyun
Yang, Tae-Jin
author_facet Jang, Yeeun
Park, Jee Young
Kang, Shin-Jae
Park, Hyun-Seung
Shim, Hyeonah
Lee, Taek Joo
Kang, Jung Hwa
Sung, Sang Hyun
Yang, Tae-Jin
author_sort Jang, Yeeun
collection PubMed
description Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them.
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spelling pubmed-77997322021-01-19 The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) Jang, Yeeun Park, Jee Young Kang, Shin-Jae Park, Hyun-Seung Shim, Hyeonah Lee, Taek Joo Kang, Jung Hwa Sung, Sang Hyun Yang, Tae-Jin Mitochondrial DNA B Resour Mitogenome Announcement Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them. Taylor & Francis 2018-10-08 /pmc/articles/PMC7799732/ /pubmed/33474411 http://dx.doi.org/10.1080/23802359.2018.1511858 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Jang, Yeeun
Park, Jee Young
Kang, Shin-Jae
Park, Hyun-Seung
Shim, Hyeonah
Lee, Taek Joo
Kang, Jung Hwa
Sung, Sang Hyun
Yang, Tae-Jin
The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
title The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
title_full The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
title_fullStr The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
title_full_unstemmed The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
title_short The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
title_sort complete chloroplast genome sequence of hosta capitata (koidz.) nakai (asparagaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799732/
https://www.ncbi.nlm.nih.gov/pubmed/33474411
http://dx.doi.org/10.1080/23802359.2018.1511858
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