Cargando…
Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus
The complete plastid genome (plastome) sequences of Abeliophyllum distichum Nakai, a monotypic endemic genus of Korea, were determined in this study. The plastome of A. distichum was 1,559,825 bp in length (NCBI acc. no. KT274029) and contained a pair of inverted repeat regions (IRa and IRb) of 25,7...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799749/ https://www.ncbi.nlm.nih.gov/pubmed/33473565 http://dx.doi.org/10.1080/23802359.2016.1202741 |
_version_ | 1783635197780033536 |
---|---|
author | Kim, Hoe-Won Lee, Hae-Lim Lee, Dong-Keun Kim, Ki-Joong |
author_facet | Kim, Hoe-Won Lee, Hae-Lim Lee, Dong-Keun Kim, Ki-Joong |
author_sort | Kim, Hoe-Won |
collection | PubMed |
description | The complete plastid genome (plastome) sequences of Abeliophyllum distichum Nakai, a monotypic endemic genus of Korea, were determined in this study. The plastome of A. distichum was 1,559,825 bp in length (NCBI acc. no. KT274029) and contained a pair of inverted repeat regions (IRa and IRb) of 25,703 bp, which was divided into large single copy region (LSC) region of 86,742 bp and small single copy (SSC) region of 17,834 bp. The overall GC contents of the plastome were 37.8%, and in the LSC, SSC and IR regions were 35.8%, 32.0% and 43.2%. The plastome comprised 129 genes (112 unique), including 78 protein-coding genes, 30 tRNA genes, 4 rRNA genes. Phylogenetic analysis based on 83 genes from 41 plastomes showed that A. distichum was most closely related to Jasminum nudiflorum with strong support values. |
format | Online Article Text |
id | pubmed-7799749 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77997492021-01-19 Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus Kim, Hoe-Won Lee, Hae-Lim Lee, Dong-Keun Kim, Ki-Joong Mitochondrial DNA B Resour Mitocommunication The complete plastid genome (plastome) sequences of Abeliophyllum distichum Nakai, a monotypic endemic genus of Korea, were determined in this study. The plastome of A. distichum was 1,559,825 bp in length (NCBI acc. no. KT274029) and contained a pair of inverted repeat regions (IRa and IRb) of 25,703 bp, which was divided into large single copy region (LSC) region of 86,742 bp and small single copy (SSC) region of 17,834 bp. The overall GC contents of the plastome were 37.8%, and in the LSC, SSC and IR regions were 35.8%, 32.0% and 43.2%. The plastome comprised 129 genes (112 unique), including 78 protein-coding genes, 30 tRNA genes, 4 rRNA genes. Phylogenetic analysis based on 83 genes from 41 plastomes showed that A. distichum was most closely related to Jasminum nudiflorum with strong support values. Taylor & Francis 2016-08-31 /pmc/articles/PMC7799749/ /pubmed/33473565 http://dx.doi.org/10.1080/23802359.2016.1202741 Text en © 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitocommunication Kim, Hoe-Won Lee, Hae-Lim Lee, Dong-Keun Kim, Ki-Joong Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus |
title | Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus |
title_full | Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus |
title_fullStr | Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus |
title_full_unstemmed | Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus |
title_short | Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus |
title_sort | complete plastid genome sequences of abeliophyllum distichum nakai (oleaceae), a korea endemic genus |
topic | Mitocommunication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799749/ https://www.ncbi.nlm.nih.gov/pubmed/33473565 http://dx.doi.org/10.1080/23802359.2016.1202741 |
work_keys_str_mv | AT kimhoewon completeplastidgenomesequencesofabeliophyllumdistichumnakaioleaceaeakoreaendemicgenus AT leehaelim completeplastidgenomesequencesofabeliophyllumdistichumnakaioleaceaeakoreaendemicgenus AT leedongkeun completeplastidgenomesequencesofabeliophyllumdistichumnakaioleaceaeakoreaendemicgenus AT kimkijoong completeplastidgenomesequencesofabeliophyllumdistichumnakaioleaceaeakoreaendemicgenus |