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The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)

This is a de novo assembly and annotation of a complete mitochondrial genome from Pyrus pyrifolia in the family Rosaceae. The complete mitochondrial genome of P. pyrifolia was assembled from PacBio RSII P6-C4 sequencing reads. The circular genome was 458,873 bp in length, containing 39 protein-codin...

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Autores principales: Chung, Ho Yong, Won, So Yun, Kang, Sang-Ho, Sohn, Seong-Han, Kim, Jung Sun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799752/
https://www.ncbi.nlm.nih.gov/pubmed/33474029
http://dx.doi.org/10.1080/23802359.2017.1413300
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author Chung, Ho Yong
Won, So Yun
Kang, Sang-Ho
Sohn, Seong-Han
Kim, Jung Sun
author_facet Chung, Ho Yong
Won, So Yun
Kang, Sang-Ho
Sohn, Seong-Han
Kim, Jung Sun
author_sort Chung, Ho Yong
collection PubMed
description This is a de novo assembly and annotation of a complete mitochondrial genome from Pyrus pyrifolia in the family Rosaceae. The complete mitochondrial genome of P. pyrifolia was assembled from PacBio RSII P6-C4 sequencing reads. The circular genome was 458,873 bp in length, containing 39 protein-coding genes, 23 tRNA genes and three rRNA genes. The nucleotide composition was A (27.5%), T (27.3%), G (22.6%) and C (22.6%) with GC content of 45.2%. Most of protein-coding genes use the canonical start codon ATG, whereas nad1, cox1, matR and rps4 use ACG, mttB uses ATT, rpl16 and rps19 uses GTG. The stop codon is also common in all mitochondrial genes. The phylogenetic analysis showed that P. pyrifolia was clustered with the Malus of Rosaceae family. Maximum-likelihood analysis suggests a clear relationship of Rosids and Asterids, which support the traditional classification.
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spelling pubmed-77997522021-01-19 The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) Chung, Ho Yong Won, So Yun Kang, Sang-Ho Sohn, Seong-Han Kim, Jung Sun Mitochondrial DNA B Resour Mitogenome Announcement This is a de novo assembly and annotation of a complete mitochondrial genome from Pyrus pyrifolia in the family Rosaceae. The complete mitochondrial genome of P. pyrifolia was assembled from PacBio RSII P6-C4 sequencing reads. The circular genome was 458,873 bp in length, containing 39 protein-coding genes, 23 tRNA genes and three rRNA genes. The nucleotide composition was A (27.5%), T (27.3%), G (22.6%) and C (22.6%) with GC content of 45.2%. Most of protein-coding genes use the canonical start codon ATG, whereas nad1, cox1, matR and rps4 use ACG, mttB uses ATT, rpl16 and rps19 uses GTG. The stop codon is also common in all mitochondrial genes. The phylogenetic analysis showed that P. pyrifolia was clustered with the Malus of Rosaceae family. Maximum-likelihood analysis suggests a clear relationship of Rosids and Asterids, which support the traditional classification. Taylor & Francis 2017-12-11 /pmc/articles/PMC7799752/ /pubmed/33474029 http://dx.doi.org/10.1080/23802359.2017.1413300 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chung, Ho Yong
Won, So Yun
Kang, Sang-Ho
Sohn, Seong-Han
Kim, Jung Sun
The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
title The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
title_full The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
title_fullStr The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
title_full_unstemmed The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
title_short The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
title_sort complete mitochondrial genome of wonwhang (pyrus pyrifolia)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799752/
https://www.ncbi.nlm.nih.gov/pubmed/33474029
http://dx.doi.org/10.1080/23802359.2017.1413300
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