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The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia)
This is a de novo assembly and annotation of a complete mitochondrial genome from Pyrus pyrifolia in the family Rosaceae. The complete mitochondrial genome of P. pyrifolia was assembled from PacBio RSII P6-C4 sequencing reads. The circular genome was 458,873 bp in length, containing 39 protein-codin...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799752/ https://www.ncbi.nlm.nih.gov/pubmed/33474029 http://dx.doi.org/10.1080/23802359.2017.1413300 |
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author | Chung, Ho Yong Won, So Yun Kang, Sang-Ho Sohn, Seong-Han Kim, Jung Sun |
author_facet | Chung, Ho Yong Won, So Yun Kang, Sang-Ho Sohn, Seong-Han Kim, Jung Sun |
author_sort | Chung, Ho Yong |
collection | PubMed |
description | This is a de novo assembly and annotation of a complete mitochondrial genome from Pyrus pyrifolia in the family Rosaceae. The complete mitochondrial genome of P. pyrifolia was assembled from PacBio RSII P6-C4 sequencing reads. The circular genome was 458,873 bp in length, containing 39 protein-coding genes, 23 tRNA genes and three rRNA genes. The nucleotide composition was A (27.5%), T (27.3%), G (22.6%) and C (22.6%) with GC content of 45.2%. Most of protein-coding genes use the canonical start codon ATG, whereas nad1, cox1, matR and rps4 use ACG, mttB uses ATT, rpl16 and rps19 uses GTG. The stop codon is also common in all mitochondrial genes. The phylogenetic analysis showed that P. pyrifolia was clustered with the Malus of Rosaceae family. Maximum-likelihood analysis suggests a clear relationship of Rosids and Asterids, which support the traditional classification. |
format | Online Article Text |
id | pubmed-7799752 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77997522021-01-19 The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) Chung, Ho Yong Won, So Yun Kang, Sang-Ho Sohn, Seong-Han Kim, Jung Sun Mitochondrial DNA B Resour Mitogenome Announcement This is a de novo assembly and annotation of a complete mitochondrial genome from Pyrus pyrifolia in the family Rosaceae. The complete mitochondrial genome of P. pyrifolia was assembled from PacBio RSII P6-C4 sequencing reads. The circular genome was 458,873 bp in length, containing 39 protein-coding genes, 23 tRNA genes and three rRNA genes. The nucleotide composition was A (27.5%), T (27.3%), G (22.6%) and C (22.6%) with GC content of 45.2%. Most of protein-coding genes use the canonical start codon ATG, whereas nad1, cox1, matR and rps4 use ACG, mttB uses ATT, rpl16 and rps19 uses GTG. The stop codon is also common in all mitochondrial genes. The phylogenetic analysis showed that P. pyrifolia was clustered with the Malus of Rosaceae family. Maximum-likelihood analysis suggests a clear relationship of Rosids and Asterids, which support the traditional classification. Taylor & Francis 2017-12-11 /pmc/articles/PMC7799752/ /pubmed/33474029 http://dx.doi.org/10.1080/23802359.2017.1413300 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Chung, Ho Yong Won, So Yun Kang, Sang-Ho Sohn, Seong-Han Kim, Jung Sun The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) |
title | The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) |
title_full | The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) |
title_fullStr | The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) |
title_full_unstemmed | The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) |
title_short | The complete mitochondrial genome of Wonwhang (Pyrus pyrifolia) |
title_sort | complete mitochondrial genome of wonwhang (pyrus pyrifolia) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799752/ https://www.ncbi.nlm.nih.gov/pubmed/33474029 http://dx.doi.org/10.1080/23802359.2017.1413300 |
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