The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae)

The complete chloroplast (cp) genome sequence of Actinidia rufa was determined by next-generation sequencing in this study. The whole cp genome was 156,543 bp in length, containing a large single-copy (LSC) of 88,435 bp and a small single-copy (SSC) region of 20,307 bp, which was separated by a pair...

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Autores principales: Kim, Sang-Chul, Lee, Jei-Wan, Baek, Seung-Hoon, Lee, Min-Woo, Kang, Young-Je
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799798/
https://www.ncbi.nlm.nih.gov/pubmed/33474242
http://dx.doi.org/10.1080/23802359.2018.1450676
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author Kim, Sang-Chul
Lee, Jei-Wan
Baek, Seung-Hoon
Lee, Min-Woo
Kang, Young-Je
author_facet Kim, Sang-Chul
Lee, Jei-Wan
Baek, Seung-Hoon
Lee, Min-Woo
Kang, Young-Je
author_sort Kim, Sang-Chul
collection PubMed
description The complete chloroplast (cp) genome sequence of Actinidia rufa was determined by next-generation sequencing in this study. The whole cp genome was 156,543 bp in length, containing a large single-copy (LSC) of 88,435 bp and a small single-copy (SSC) region of 20,307 bp, which was separated by a pair of 23,900 bp inverted repeat (IR) regions. The genome contained 131 genes, including 84 protein-coding genes, 39 tRNA genes, 8 ribosomal RNA genes. Two events were found in the Actinidiaceae chloroplast genome. One was the deletion of the clpP gene and the other was the trnfM-CAU gene in the same direction in LSC region. The phylogenetic position of A. rufa was closely clustered with A. chinensis, A. deliciosa as sister species.
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spelling pubmed-77997982021-01-19 The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae) Kim, Sang-Chul Lee, Jei-Wan Baek, Seung-Hoon Lee, Min-Woo Kang, Young-Je Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast (cp) genome sequence of Actinidia rufa was determined by next-generation sequencing in this study. The whole cp genome was 156,543 bp in length, containing a large single-copy (LSC) of 88,435 bp and a small single-copy (SSC) region of 20,307 bp, which was separated by a pair of 23,900 bp inverted repeat (IR) regions. The genome contained 131 genes, including 84 protein-coding genes, 39 tRNA genes, 8 ribosomal RNA genes. Two events were found in the Actinidiaceae chloroplast genome. One was the deletion of the clpP gene and the other was the trnfM-CAU gene in the same direction in LSC region. The phylogenetic position of A. rufa was closely clustered with A. chinensis, A. deliciosa as sister species. Taylor & Francis 2018-05-09 /pmc/articles/PMC7799798/ /pubmed/33474242 http://dx.doi.org/10.1080/23802359.2018.1450676 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Kim, Sang-Chul
Lee, Jei-Wan
Baek, Seung-Hoon
Lee, Min-Woo
Kang, Young-Je
The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae)
title The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae)
title_full The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae)
title_fullStr The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae)
title_full_unstemmed The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae)
title_short The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae)
title_sort complete chloroplast genome sequence of actinidia rufa (actinidiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799798/
https://www.ncbi.nlm.nih.gov/pubmed/33474242
http://dx.doi.org/10.1080/23802359.2018.1450676
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