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The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny
Wild oat, Avena sterilis L. is a stout broad-leaved annual grass resembling cultivated oats in general appearance. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. sterilis for the first time to investigate their phylogenetic relationship in the family Poaceae. The com...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799852/ https://www.ncbi.nlm.nih.gov/pubmed/33474156 http://dx.doi.org/10.1080/23802359.2018.1444518 |
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author | Sebastin, Raveendar Lee, Kyung Jun Shin, Myoung-Jae Cho, Gyu-Taek Ma, Kyung-Ho Lee, Jung-Ro Lee, Gi-An Chung, Jong-Wook |
author_facet | Sebastin, Raveendar Lee, Kyung Jun Shin, Myoung-Jae Cho, Gyu-Taek Ma, Kyung-Ho Lee, Jung-Ro Lee, Gi-An Chung, Jong-Wook |
author_sort | Sebastin, Raveendar |
collection | PubMed |
description | Wild oat, Avena sterilis L. is a stout broad-leaved annual grass resembling cultivated oats in general appearance. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. sterilis for the first time to investigate their phylogenetic relationship in the family Poaceae. The complete cp genome sequence is 135,887 bp in length with 38.5% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (21,603 bp) separated by a small single-copy region (12,575 bp) and a large single-copy region (80,106). The cp genome encodes 111 unique genes, 76 of which are protein-coding genes, four rRNA genes, 30 tRNA genes, and 18 duplicated genes in the inverted repeat region. The phylogenetic analysis indicated A. sterilis closely clustered with the cultivated oat, A. sativa L. |
format | Online Article Text |
id | pubmed-7799852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77998522021-01-19 The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny Sebastin, Raveendar Lee, Kyung Jun Shin, Myoung-Jae Cho, Gyu-Taek Ma, Kyung-Ho Lee, Jung-Ro Lee, Gi-An Chung, Jong-Wook Mitochondrial DNA B Resour Mitogenome Announcement Wild oat, Avena sterilis L. is a stout broad-leaved annual grass resembling cultivated oats in general appearance. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. sterilis for the first time to investigate their phylogenetic relationship in the family Poaceae. The complete cp genome sequence is 135,887 bp in length with 38.5% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (21,603 bp) separated by a small single-copy region (12,575 bp) and a large single-copy region (80,106). The cp genome encodes 111 unique genes, 76 of which are protein-coding genes, four rRNA genes, 30 tRNA genes, and 18 duplicated genes in the inverted repeat region. The phylogenetic analysis indicated A. sterilis closely clustered with the cultivated oat, A. sativa L. Taylor & Francis 2018-03-05 /pmc/articles/PMC7799852/ /pubmed/33474156 http://dx.doi.org/10.1080/23802359.2018.1444518 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Sebastin, Raveendar Lee, Kyung Jun Shin, Myoung-Jae Cho, Gyu-Taek Ma, Kyung-Ho Lee, Jung-Ro Lee, Gi-An Chung, Jong-Wook The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny |
title | The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny |
title_full | The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny |
title_fullStr | The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny |
title_full_unstemmed | The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny |
title_short | The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny |
title_sort | complete chloroplast genome sequence of wild oat, avena sterilis l. (poaceae) and its phylogeny |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799852/ https://www.ncbi.nlm.nih.gov/pubmed/33474156 http://dx.doi.org/10.1080/23802359.2018.1444518 |
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