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The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny

Wild oat, Avena sterilis L. is a stout broad-leaved annual grass resembling cultivated oats in general appearance. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. sterilis for the first time to investigate their phylogenetic relationship in the family Poaceae. The com...

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Autores principales: Sebastin, Raveendar, Lee, Kyung Jun, Shin, Myoung-Jae, Cho, Gyu-Taek, Ma, Kyung-Ho, Lee, Jung-Ro, Lee, Gi-An, Chung, Jong-Wook
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799852/
https://www.ncbi.nlm.nih.gov/pubmed/33474156
http://dx.doi.org/10.1080/23802359.2018.1444518
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author Sebastin, Raveendar
Lee, Kyung Jun
Shin, Myoung-Jae
Cho, Gyu-Taek
Ma, Kyung-Ho
Lee, Jung-Ro
Lee, Gi-An
Chung, Jong-Wook
author_facet Sebastin, Raveendar
Lee, Kyung Jun
Shin, Myoung-Jae
Cho, Gyu-Taek
Ma, Kyung-Ho
Lee, Jung-Ro
Lee, Gi-An
Chung, Jong-Wook
author_sort Sebastin, Raveendar
collection PubMed
description Wild oat, Avena sterilis L. is a stout broad-leaved annual grass resembling cultivated oats in general appearance. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. sterilis for the first time to investigate their phylogenetic relationship in the family Poaceae. The complete cp genome sequence is 135,887 bp in length with 38.5% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (21,603 bp) separated by a small single-copy region (12,575 bp) and a large single-copy region (80,106). The cp genome encodes 111 unique genes, 76 of which are protein-coding genes, four rRNA genes, 30 tRNA genes, and 18 duplicated genes in the inverted repeat region. The phylogenetic analysis indicated A. sterilis closely clustered with the cultivated oat, A. sativa L.
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spelling pubmed-77998522021-01-19 The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny Sebastin, Raveendar Lee, Kyung Jun Shin, Myoung-Jae Cho, Gyu-Taek Ma, Kyung-Ho Lee, Jung-Ro Lee, Gi-An Chung, Jong-Wook Mitochondrial DNA B Resour Mitogenome Announcement Wild oat, Avena sterilis L. is a stout broad-leaved annual grass resembling cultivated oats in general appearance. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. sterilis for the first time to investigate their phylogenetic relationship in the family Poaceae. The complete cp genome sequence is 135,887 bp in length with 38.5% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (21,603 bp) separated by a small single-copy region (12,575 bp) and a large single-copy region (80,106). The cp genome encodes 111 unique genes, 76 of which are protein-coding genes, four rRNA genes, 30 tRNA genes, and 18 duplicated genes in the inverted repeat region. The phylogenetic analysis indicated A. sterilis closely clustered with the cultivated oat, A. sativa L. Taylor & Francis 2018-03-05 /pmc/articles/PMC7799852/ /pubmed/33474156 http://dx.doi.org/10.1080/23802359.2018.1444518 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Sebastin, Raveendar
Lee, Kyung Jun
Shin, Myoung-Jae
Cho, Gyu-Taek
Ma, Kyung-Ho
Lee, Jung-Ro
Lee, Gi-An
Chung, Jong-Wook
The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny
title The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny
title_full The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny
title_fullStr The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny
title_full_unstemmed The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny
title_short The complete chloroplast genome sequence of wild oat, Avena sterilis L. (Poaceae) and its phylogeny
title_sort complete chloroplast genome sequence of wild oat, avena sterilis l. (poaceae) and its phylogeny
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799852/
https://www.ncbi.nlm.nih.gov/pubmed/33474156
http://dx.doi.org/10.1080/23802359.2018.1444518
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