Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae)

The Sikkim Mountain vole (Neodon sikimensis) belongs to the subfamily Arvicolinae. In this study, we sequenced the complete mitochondrial genome of N. sikimensis. It was determined to be 16,330 bp long and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and 1 control...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Qi, He, Tingting, Wei, Haixue, Li, Fengjun, Feng, Yuanchao, Zong, Hao, Chen, Shunde
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799884/
https://www.ncbi.nlm.nih.gov/pubmed/33473514
http://dx.doi.org/10.1080/23802359.2016.1180561
_version_ 1783635226119897088
author Zhang, Qi
He, Tingting
Wei, Haixue
Li, Fengjun
Feng, Yuanchao
Zong, Hao
Chen, Shunde
author_facet Zhang, Qi
He, Tingting
Wei, Haixue
Li, Fengjun
Feng, Yuanchao
Zong, Hao
Chen, Shunde
author_sort Zhang, Qi
collection PubMed
description The Sikkim Mountain vole (Neodon sikimensis) belongs to the subfamily Arvicolinae. In this study, we sequenced the complete mitochondrial genome of N. sikimensis. It was determined to be 16,330 bp long and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and 1 control region. The nucleotide sequence data of 12 heavy-strand protein-coding genes of N. sikimensis and other 22 rodents were used for phylogenetic analysis. Tree constructed using Bayesian phylogenetic methods demonstrated that N. sikimensis was a sister to N. irene, and Microtus genus species did not cluster together with each other, making the genus a paraphyletic group.
format Online
Article
Text
id pubmed-7799884
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77998842021-01-19 Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae) Zhang, Qi He, Tingting Wei, Haixue Li, Fengjun Feng, Yuanchao Zong, Hao Chen, Shunde Mitochondrial DNA B Resour Mitogenome Announcement The Sikkim Mountain vole (Neodon sikimensis) belongs to the subfamily Arvicolinae. In this study, we sequenced the complete mitochondrial genome of N. sikimensis. It was determined to be 16,330 bp long and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and 1 control region. The nucleotide sequence data of 12 heavy-strand protein-coding genes of N. sikimensis and other 22 rodents were used for phylogenetic analysis. Tree constructed using Bayesian phylogenetic methods demonstrated that N. sikimensis was a sister to N. irene, and Microtus genus species did not cluster together with each other, making the genus a paraphyletic group. Taylor & Francis 2016-07-08 /pmc/articles/PMC7799884/ /pubmed/33473514 http://dx.doi.org/10.1080/23802359.2016.1180561 Text en © 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhang, Qi
He, Tingting
Wei, Haixue
Li, Fengjun
Feng, Yuanchao
Zong, Hao
Chen, Shunde
Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae)
title Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae)
title_full Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae)
title_fullStr Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae)
title_full_unstemmed Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae)
title_short Characterization of the complete mitochondrial genome and phylogenetic relationship of Neodon sikimensis (Rodentia: Arvicolinae)
title_sort characterization of the complete mitochondrial genome and phylogenetic relationship of neodon sikimensis (rodentia: arvicolinae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799884/
https://www.ncbi.nlm.nih.gov/pubmed/33473514
http://dx.doi.org/10.1080/23802359.2016.1180561
work_keys_str_mv AT zhangqi characterizationofthecompletemitochondrialgenomeandphylogeneticrelationshipofneodonsikimensisrodentiaarvicolinae
AT hetingting characterizationofthecompletemitochondrialgenomeandphylogeneticrelationshipofneodonsikimensisrodentiaarvicolinae
AT weihaixue characterizationofthecompletemitochondrialgenomeandphylogeneticrelationshipofneodonsikimensisrodentiaarvicolinae
AT lifengjun characterizationofthecompletemitochondrialgenomeandphylogeneticrelationshipofneodonsikimensisrodentiaarvicolinae
AT fengyuanchao characterizationofthecompletemitochondrialgenomeandphylogeneticrelationshipofneodonsikimensisrodentiaarvicolinae
AT zonghao characterizationofthecompletemitochondrialgenomeandphylogeneticrelationshipofneodonsikimensisrodentiaarvicolinae
AT chenshunde characterizationofthecompletemitochondrialgenomeandphylogeneticrelationshipofneodonsikimensisrodentiaarvicolinae

Ejemplares similares