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Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China
Lycium barbarum (Solanaceae) is a unique economic plant to China. The complete chloroplast (cp)genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 155,656 bp in size, including a pair of inverted repeat (IR) regions of 25,451 bp, a large single copy...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799892/ https://www.ncbi.nlm.nih.gov/pubmed/33474415 http://dx.doi.org/10.1080/23802359.2018.1509930 |
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author | Jia, Guolun Xin, Guiliang Ren, Xiaolong Du, Xiaomin Liu, Huidong Hao, Nan Wang, Cuiping Ni, Xilu Liu, Wenzhe |
author_facet | Jia, Guolun Xin, Guiliang Ren, Xiaolong Du, Xiaomin Liu, Huidong Hao, Nan Wang, Cuiping Ni, Xilu Liu, Wenzhe |
author_sort | Jia, Guolun |
collection | PubMed |
description | Lycium barbarum (Solanaceae) is a unique economic plant to China. The complete chloroplast (cp)genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 155,656 bp in size, including a pair of inverted repeat (IR) regions of 25,451 bp, a large single copy (LSC) region of 86,554 bp and a small single copy (SSC) region of 18,200 bp. Besides, 15 genes possess a single intron, while another three genes (clpP, rps12 and ycf3) have a couple of introns. The GC content of entire L. barbarum cp genome, LSC, SSC and IR regions are 37.8%, 35.9%, 32.3%, and 43.2%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that L. barbarum and Atropa belladonna are closely related with each other within the family Solanaceae. |
format | Online Article Text |
id | pubmed-7799892 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77998922021-01-19 Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China Jia, Guolun Xin, Guiliang Ren, Xiaolong Du, Xiaomin Liu, Huidong Hao, Nan Wang, Cuiping Ni, Xilu Liu, Wenzhe Mitochondrial DNA B Resour Mitogenome Announcement Lycium barbarum (Solanaceae) is a unique economic plant to China. The complete chloroplast (cp)genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 155,656 bp in size, including a pair of inverted repeat (IR) regions of 25,451 bp, a large single copy (LSC) region of 86,554 bp and a small single copy (SSC) region of 18,200 bp. Besides, 15 genes possess a single intron, while another three genes (clpP, rps12 and ycf3) have a couple of introns. The GC content of entire L. barbarum cp genome, LSC, SSC and IR regions are 37.8%, 35.9%, 32.3%, and 43.2%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that L. barbarum and Atropa belladonna are closely related with each other within the family Solanaceae. Taylor & Francis 2018-10-03 /pmc/articles/PMC7799892/ /pubmed/33474415 http://dx.doi.org/10.1080/23802359.2018.1509930 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Jia, Guolun Xin, Guiliang Ren, Xiaolong Du, Xiaomin Liu, Huidong Hao, Nan Wang, Cuiping Ni, Xilu Liu, Wenzhe Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China |
title | Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China |
title_full | Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China |
title_fullStr | Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China |
title_full_unstemmed | Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China |
title_short | Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China |
title_sort | characterization of the complete chloroplast genome of lycium barbarum (solanales: solanaceae), a unique economic plant to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799892/ https://www.ncbi.nlm.nih.gov/pubmed/33474415 http://dx.doi.org/10.1080/23802359.2018.1509930 |
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