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Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China

Lycium barbarum (Solanaceae) is a unique economic plant to China. The complete chloroplast (cp)genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 155,656 bp in size, including a pair of inverted repeat (IR) regions of 25,451 bp, a large single copy...

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Autores principales: Jia, Guolun, Xin, Guiliang, Ren, Xiaolong, Du, Xiaomin, Liu, Huidong, Hao, Nan, Wang, Cuiping, Ni, Xilu, Liu, Wenzhe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799892/
https://www.ncbi.nlm.nih.gov/pubmed/33474415
http://dx.doi.org/10.1080/23802359.2018.1509930
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author Jia, Guolun
Xin, Guiliang
Ren, Xiaolong
Du, Xiaomin
Liu, Huidong
Hao, Nan
Wang, Cuiping
Ni, Xilu
Liu, Wenzhe
author_facet Jia, Guolun
Xin, Guiliang
Ren, Xiaolong
Du, Xiaomin
Liu, Huidong
Hao, Nan
Wang, Cuiping
Ni, Xilu
Liu, Wenzhe
author_sort Jia, Guolun
collection PubMed
description Lycium barbarum (Solanaceae) is a unique economic plant to China. The complete chloroplast (cp)genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 155,656 bp in size, including a pair of inverted repeat (IR) regions of 25,451 bp, a large single copy (LSC) region of 86,554 bp and a small single copy (SSC) region of 18,200 bp. Besides, 15 genes possess a single intron, while another three genes (clpP, rps12 and ycf3) have a couple of introns. The GC content of entire L. barbarum cp genome, LSC, SSC and IR regions are 37.8%, 35.9%, 32.3%, and 43.2%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that L. barbarum and Atropa belladonna are closely related with each other within the family Solanaceae.
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spelling pubmed-77998922021-01-19 Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China Jia, Guolun Xin, Guiliang Ren, Xiaolong Du, Xiaomin Liu, Huidong Hao, Nan Wang, Cuiping Ni, Xilu Liu, Wenzhe Mitochondrial DNA B Resour Mitogenome Announcement Lycium barbarum (Solanaceae) is a unique economic plant to China. The complete chloroplast (cp)genome was sequenced and assembled by using Illumina paired-end reads data. The circular cp genome is 155,656 bp in size, including a pair of inverted repeat (IR) regions of 25,451 bp, a large single copy (LSC) region of 86,554 bp and a small single copy (SSC) region of 18,200 bp. Besides, 15 genes possess a single intron, while another three genes (clpP, rps12 and ycf3) have a couple of introns. The GC content of entire L. barbarum cp genome, LSC, SSC and IR regions are 37.8%, 35.9%, 32.3%, and 43.2%, respectively. Phylogenetic analysis based on the concatenated coding sequences of cp PCGs showed that L. barbarum and Atropa belladonna are closely related with each other within the family Solanaceae. Taylor & Francis 2018-10-03 /pmc/articles/PMC7799892/ /pubmed/33474415 http://dx.doi.org/10.1080/23802359.2018.1509930 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Jia, Guolun
Xin, Guiliang
Ren, Xiaolong
Du, Xiaomin
Liu, Huidong
Hao, Nan
Wang, Cuiping
Ni, Xilu
Liu, Wenzhe
Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China
title Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China
title_full Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China
title_fullStr Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China
title_full_unstemmed Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China
title_short Characterization of the complete chloroplast genome of Lycium barbarum (Solanales: Solanaceae), a unique economic plant to China
title_sort characterization of the complete chloroplast genome of lycium barbarum (solanales: solanaceae), a unique economic plant to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799892/
https://www.ncbi.nlm.nih.gov/pubmed/33474415
http://dx.doi.org/10.1080/23802359.2018.1509930
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