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Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)

Rumex acetosa, known as sheep’s sorrel, red sorrel, sour weed, and field sorrel, is a species of flowering plant in the buckwheat family Polygonaceae. In this study, the complete chloroplast (cp) genome of R. acetosa (Rumiceae) was determined through Illumina sequencing method. The complete chloropl...

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Autores principales: Gui, Lingjian, Jiang, Shaofeng, Wang, Huaiping, Nong, Dongxin, Liu, Yingying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799923/
https://www.ncbi.nlm.nih.gov/pubmed/33474359
http://dx.doi.org/10.1080/23802359.2018.1501297
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author Gui, Lingjian
Jiang, Shaofeng
Wang, Huaiping
Nong, Dongxin
Liu, Yingying
author_facet Gui, Lingjian
Jiang, Shaofeng
Wang, Huaiping
Nong, Dongxin
Liu, Yingying
author_sort Gui, Lingjian
collection PubMed
description Rumex acetosa, known as sheep’s sorrel, red sorrel, sour weed, and field sorrel, is a species of flowering plant in the buckwheat family Polygonaceae. In this study, the complete chloroplast (cp) genome of R. acetosa (Rumiceae) was determined through Illumina sequencing method. The complete chloroplast genome of R. acetosa was 160,269 bp in length and contained a pair of IR regions (30,503 bp) separated by a small single copy region (13,128 bp) and a large single copy region (86,135 bp). This cp genome is encoded with 129 genes including 83 protein-coding genes, 36 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of R. acetosa cp genome is 37.2%. By phylogenetic analysis using Bayesian method, R. acetosa showed the closest relationship with other 2 Rumiceae species, Rheum palmatum and Oxyria sinensis.
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spelling pubmed-77999232021-01-19 Characterization of the complete chloroplast genome of sorrel (Rumex acetosa) Gui, Lingjian Jiang, Shaofeng Wang, Huaiping Nong, Dongxin Liu, Yingying Mitochondrial DNA B Resour Mitogenome Announcement Rumex acetosa, known as sheep’s sorrel, red sorrel, sour weed, and field sorrel, is a species of flowering plant in the buckwheat family Polygonaceae. In this study, the complete chloroplast (cp) genome of R. acetosa (Rumiceae) was determined through Illumina sequencing method. The complete chloroplast genome of R. acetosa was 160,269 bp in length and contained a pair of IR regions (30,503 bp) separated by a small single copy region (13,128 bp) and a large single copy region (86,135 bp). This cp genome is encoded with 129 genes including 83 protein-coding genes, 36 tRNA genes, and 8 ribosomal RNA genes. The overall GC content of R. acetosa cp genome is 37.2%. By phylogenetic analysis using Bayesian method, R. acetosa showed the closest relationship with other 2 Rumiceae species, Rheum palmatum and Oxyria sinensis. Taylor & Francis 2018-08-17 /pmc/articles/PMC7799923/ /pubmed/33474359 http://dx.doi.org/10.1080/23802359.2018.1501297 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Gui, Lingjian
Jiang, Shaofeng
Wang, Huaiping
Nong, Dongxin
Liu, Yingying
Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)
title Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)
title_full Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)
title_fullStr Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)
title_full_unstemmed Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)
title_short Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)
title_sort characterization of the complete chloroplast genome of sorrel (rumex acetosa)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799923/
https://www.ncbi.nlm.nih.gov/pubmed/33474359
http://dx.doi.org/10.1080/23802359.2018.1501297
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