Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study

The complete mitochondrial genomes of two Sri Lankan junglefowl (Gallus lafayetti: CJF) individuals were sequenced by using next-generation sequencing technique. Samples were collected from Rathnapura and Pelmadulla areas in Sri Lanka. The complete mitochondrial DNA is 16,839 bp in length, with a ty...

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Autores principales: Hirimuthugoda, Nalini Yasoda, Adeola, Adeniyi C., Chen, Xing, Perera, Patthamesthrige Wimal Anthony, Gunawardena, Weligalle Wedarallage Dewar Asoka, Gunwardana, Humpita Gamaralalage Thilini Nisanka, Yin, Ting-Ting, Wang, Ming-Shan, Li, Gui-Mei, Peng, Min-Sheng, Zhang, Ya-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799929/
https://www.ncbi.nlm.nih.gov/pubmed/33474074
http://dx.doi.org/10.1080/23802359.2017.1422409
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author Hirimuthugoda, Nalini Yasoda
Adeola, Adeniyi C.
Chen, Xing
Perera, Patthamesthrige Wimal Anthony
Gunawardena, Weligalle Wedarallage Dewar Asoka
Gunwardana, Humpita Gamaralalage Thilini Nisanka
Yin, Ting-Ting
Wang, Ming-Shan
Li, Gui-Mei
Peng, Min-Sheng
Zhang, Ya-Ping
author_facet Hirimuthugoda, Nalini Yasoda
Adeola, Adeniyi C.
Chen, Xing
Perera, Patthamesthrige Wimal Anthony
Gunawardena, Weligalle Wedarallage Dewar Asoka
Gunwardana, Humpita Gamaralalage Thilini Nisanka
Yin, Ting-Ting
Wang, Ming-Shan
Li, Gui-Mei
Peng, Min-Sheng
Zhang, Ya-Ping
author_sort Hirimuthugoda, Nalini Yasoda
collection PubMed
description The complete mitochondrial genomes of two Sri Lankan junglefowl (Gallus lafayetti: CJF) individuals were sequenced by using next-generation sequencing technique. Samples were collected from Rathnapura and Pelmadulla areas in Sri Lanka. The complete mitochondrial DNA is 16,839 bp in length, with a typical mitogenome structure composed of a non-coding control region, 22 tRNA, two rRNA, and 13 protein-coding genes. Overall base composition is 30% A, 23.9% T, 32.3% C, and 13.6% G indicating high content of 54.0% A + T for both individuals. Phylogenetic analysis reveals that CJF samples cluster with the clade of the green junglefowl (Gallus varius) and red junglefowl (Gallus gallus) than to grey junglefowl (Gallus sonerattii: GyJF). This result can be subsequently used to provide essential information for junglefowl evolution.
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spelling pubmed-77999292021-01-19 Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study Hirimuthugoda, Nalini Yasoda Adeola, Adeniyi C. Chen, Xing Perera, Patthamesthrige Wimal Anthony Gunawardena, Weligalle Wedarallage Dewar Asoka Gunwardana, Humpita Gamaralalage Thilini Nisanka Yin, Ting-Ting Wang, Ming-Shan Li, Gui-Mei Peng, Min-Sheng Zhang, Ya-Ping Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genomes of two Sri Lankan junglefowl (Gallus lafayetti: CJF) individuals were sequenced by using next-generation sequencing technique. Samples were collected from Rathnapura and Pelmadulla areas in Sri Lanka. The complete mitochondrial DNA is 16,839 bp in length, with a typical mitogenome structure composed of a non-coding control region, 22 tRNA, two rRNA, and 13 protein-coding genes. Overall base composition is 30% A, 23.9% T, 32.3% C, and 13.6% G indicating high content of 54.0% A + T for both individuals. Phylogenetic analysis reveals that CJF samples cluster with the clade of the green junglefowl (Gallus varius) and red junglefowl (Gallus gallus) than to grey junglefowl (Gallus sonerattii: GyJF). This result can be subsequently used to provide essential information for junglefowl evolution. Taylor & Francis 2018-01-05 /pmc/articles/PMC7799929/ /pubmed/33474074 http://dx.doi.org/10.1080/23802359.2017.1422409 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Hirimuthugoda, Nalini Yasoda
Adeola, Adeniyi C.
Chen, Xing
Perera, Patthamesthrige Wimal Anthony
Gunawardena, Weligalle Wedarallage Dewar Asoka
Gunwardana, Humpita Gamaralalage Thilini Nisanka
Yin, Ting-Ting
Wang, Ming-Shan
Li, Gui-Mei
Peng, Min-Sheng
Zhang, Ya-Ping
Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study
title Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study
title_full Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study
title_fullStr Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study
title_full_unstemmed Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study
title_short Complete mitochondrial genome of Sri Lankan Junglefowl (Gallus lafayetti) and phylogenetic study
title_sort complete mitochondrial genome of sri lankan junglefowl (gallus lafayetti) and phylogenetic study
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799929/
https://www.ncbi.nlm.nih.gov/pubmed/33474074
http://dx.doi.org/10.1080/23802359.2017.1422409
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