The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts

Sonneratia alba Sm. is one of the most widely distributed mangrove species worldwide. In this study, the whole chloroplast genome of S. alba was assembled for the first time not only in Sonneratia, but also for a member of the mangrove plant community. The total chloroplast genome was 153,061 bp in...

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Autores principales: Yu, Tianhui, Hinsinger, Damien Daniel, Strijk, Joeri Sergej, Wee, Alison Kim Shan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799946/
https://www.ncbi.nlm.nih.gov/pubmed/33474220
http://dx.doi.org/10.1080/23802359.2018.1463828
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author Yu, Tianhui
Hinsinger, Damien Daniel
Strijk, Joeri Sergej
Wee, Alison Kim Shan
author_facet Yu, Tianhui
Hinsinger, Damien Daniel
Strijk, Joeri Sergej
Wee, Alison Kim Shan
author_sort Yu, Tianhui
collection PubMed
description Sonneratia alba Sm. is one of the most widely distributed mangrove species worldwide. In this study, the whole chloroplast genome of S. alba was assembled for the first time not only in Sonneratia, but also for a member of the mangrove plant community. The total chloroplast genome was 153,061 bp in length, with a large single copy (LSC) region of 87,226 bp and a small single copy (SSC) region of 18,033 bp, separated by two inverted repeats (IRs) regions of 23,901 bp. The overall GC content was 37.3%, and 43.1%, 35.4%, and 31.1% in the IRs, LSC, and SSC regions, respectively. It contained 106 genes, including 79 coding genes, 24 tRNA genes, and four rRNA genes. A phylogenetic analysis confirmed that S. alba was clustered with Trapa maximowiczii within the family Lythraceae.
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spelling pubmed-77999462021-01-19 The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts Yu, Tianhui Hinsinger, Damien Daniel Strijk, Joeri Sergej Wee, Alison Kim Shan Mitochondrial DNA B Resour Mitogenome Announcement Sonneratia alba Sm. is one of the most widely distributed mangrove species worldwide. In this study, the whole chloroplast genome of S. alba was assembled for the first time not only in Sonneratia, but also for a member of the mangrove plant community. The total chloroplast genome was 153,061 bp in length, with a large single copy (LSC) region of 87,226 bp and a small single copy (SSC) region of 18,033 bp, separated by two inverted repeats (IRs) regions of 23,901 bp. The overall GC content was 37.3%, and 43.1%, 35.4%, and 31.1% in the IRs, LSC, and SSC regions, respectively. It contained 106 genes, including 79 coding genes, 24 tRNA genes, and four rRNA genes. A phylogenetic analysis confirmed that S. alba was clustered with Trapa maximowiczii within the family Lythraceae. Taylor & Francis 2018-04-23 /pmc/articles/PMC7799946/ /pubmed/33474220 http://dx.doi.org/10.1080/23802359.2018.1463828 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Yu, Tianhui
Hinsinger, Damien Daniel
Strijk, Joeri Sergej
Wee, Alison Kim Shan
The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts
title The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts
title_full The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts
title_fullStr The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts
title_full_unstemmed The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts
title_short The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts
title_sort first complete chloroplast genome of a major mangrove species sonneratia alba sm. and its implications on conservation efforts
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799946/
https://www.ncbi.nlm.nih.gov/pubmed/33474220
http://dx.doi.org/10.1080/23802359.2018.1463828
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