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The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba
Pimpinella rhomboidea var. tenuiloba is an endemic species in China. The complete chloroplast genome sequence of P. rhomboidea var. tenuiloba was generated by de novo assembly using whole genome next generation sequencing. The genome was 146,655 bp in length, composed of four distinct regions such a...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799953/ https://www.ncbi.nlm.nih.gov/pubmed/33474082 http://dx.doi.org/10.1080/23802359.2018.1424580 |
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author | Tan, Jinbo Yu, Yan |
author_facet | Tan, Jinbo Yu, Yan |
author_sort | Tan, Jinbo |
collection | PubMed |
description | Pimpinella rhomboidea var. tenuiloba is an endemic species in China. The complete chloroplast genome sequence of P. rhomboidea var. tenuiloba was generated by de novo assembly using whole genome next generation sequencing. The genome was 146,655 bp in length, composed of four distinct regions such as large single copy (LSC) region of 94,684 bp, small single copy (SSC) region 17,537 bp and a pair of inverted repeat regions of 17,217 bp. The genome annotation predicted a total of 113 genes, including 80 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that P. rhomboidea var. tenuiloba has close relationship with genus Angelica. |
format | Online Article Text |
id | pubmed-7799953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77999532021-01-19 The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba Tan, Jinbo Yu, Yan Mitochondrial DNA B Resour Mitogenome Announcement Pimpinella rhomboidea var. tenuiloba is an endemic species in China. The complete chloroplast genome sequence of P. rhomboidea var. tenuiloba was generated by de novo assembly using whole genome next generation sequencing. The genome was 146,655 bp in length, composed of four distinct regions such as large single copy (LSC) region of 94,684 bp, small single copy (SSC) region 17,537 bp and a pair of inverted repeat regions of 17,217 bp. The genome annotation predicted a total of 113 genes, including 80 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that P. rhomboidea var. tenuiloba has close relationship with genus Angelica. Taylor & Francis 2018-01-09 /pmc/articles/PMC7799953/ /pubmed/33474082 http://dx.doi.org/10.1080/23802359.2018.1424580 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Tan, Jinbo Yu, Yan The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba |
title | The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba |
title_full | The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba |
title_fullStr | The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba |
title_full_unstemmed | The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba |
title_short | The complete chloroplast genome of Pimpinella rhomboidea var. tenuiloba |
title_sort | complete chloroplast genome of pimpinella rhomboidea var. tenuiloba |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799953/ https://www.ncbi.nlm.nih.gov/pubmed/33474082 http://dx.doi.org/10.1080/23802359.2018.1424580 |
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