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The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae)
Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis. It becomes a popular useful tool for population and phylogeny in recently report. Here, the complete chloroplast genome of the Isatis indigotica has been reconstructed from the whole-genome Illumina sequencing dat...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799964/ https://www.ncbi.nlm.nih.gov/pubmed/33473881 http://dx.doi.org/10.1080/23802359.2017.1361356 |
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author | Yang, Shu Wang, Zhezhi |
author_facet | Yang, Shu Wang, Zhezhi |
author_sort | Yang, Shu |
collection | PubMed |
description | Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis. It becomes a popular useful tool for population and phylogeny in recently report. Here, the complete chloroplast genome of the Isatis indigotica has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 156,670 bp in size and comprises a pair of inverted repeat (IR) regions of 26,995 bp each, a large single-copy (LSC) region of 84,907 bp and a small single-copy (SSC) region of 17,773 bp. The total GC content is 36.5%, while the corresponding values of the LSC, SSC and IR region are 34.2%, 29.7% and 42.3%, respectively. The chloroplast genome contains 140 genes, including 94 protein-coding genes. The phylogenetic analysis showed a strong sister relationship with Raphanus sativus in Brassicaceae. These findings provide a foundation for further investigation of cp genome evolution in I. indigotica and other higher plants. |
format | Online Article Text |
id | pubmed-7799964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77999642021-01-19 The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) Yang, Shu Wang, Zhezhi Mitochondrial DNA B Resour Mitogenome Announcements Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis. It becomes a popular useful tool for population and phylogeny in recently report. Here, the complete chloroplast genome of the Isatis indigotica has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 156,670 bp in size and comprises a pair of inverted repeat (IR) regions of 26,995 bp each, a large single-copy (LSC) region of 84,907 bp and a small single-copy (SSC) region of 17,773 bp. The total GC content is 36.5%, while the corresponding values of the LSC, SSC and IR region are 34.2%, 29.7% and 42.3%, respectively. The chloroplast genome contains 140 genes, including 94 protein-coding genes. The phylogenetic analysis showed a strong sister relationship with Raphanus sativus in Brassicaceae. These findings provide a foundation for further investigation of cp genome evolution in I. indigotica and other higher plants. Taylor & Francis 2017-08-08 /pmc/articles/PMC7799964/ /pubmed/33473881 http://dx.doi.org/10.1080/23802359.2017.1361356 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcements Yang, Shu Wang, Zhezhi The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
title | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
title_full | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
title_fullStr | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
title_short | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
title_sort | complete chloroplast genome sequence of the medicinal and economic plant woad isatis indigotica (brassicaceae) |
topic | Mitogenome Announcements |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799964/ https://www.ncbi.nlm.nih.gov/pubmed/33473881 http://dx.doi.org/10.1080/23802359.2017.1361356 |
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