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Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)
Tricyrtis (Liliaceae) is an endemic genus in East Asia. Many of the species in the genus are in Endangered condition due to habitat loss and extensive horticultural usage in recent decades. In present study, we reported the first Tricyrtis chloroplast (cp) genome, Tricyrtis macropoda, based on Illum...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800006/ https://www.ncbi.nlm.nih.gov/pubmed/33474100 http://dx.doi.org/10.1080/23802359.2018.1431069 |
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author | Wang, Rui-Hong Gao, Jing Wu, Xue Li, Meng-Di Shen, Chao Wu, Jun-Jie Yu, Wen-Di Liu, Jin-Liang Qi, Zhe-Chen Liang, Zong-Suo |
author_facet | Wang, Rui-Hong Gao, Jing Wu, Xue Li, Meng-Di Shen, Chao Wu, Jun-Jie Yu, Wen-Di Liu, Jin-Liang Qi, Zhe-Chen Liang, Zong-Suo |
author_sort | Wang, Rui-Hong |
collection | PubMed |
description | Tricyrtis (Liliaceae) is an endemic genus in East Asia. Many of the species in the genus are in Endangered condition due to habitat loss and extensive horticultural usage in recent decades. In present study, we reported the first Tricyrtis chloroplast (cp) genome, Tricyrtis macropoda, based on Illumina pair-end sequencing data. The complete chloroplast genome size is 155,778 bp. In total, 131 genes were identified, including 85 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Fifteen genes are containing introns (clpP and ycf3 contained two introns) and 14 genes had two copies. The overall GC content of this genome was 37.4%. A further phylogenomic analysis of Liliales, including 62 taxa, was conducted for the placement of genus Tricyrtis. The complete plastome of T. marcropoda will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies in the genus and family. |
format | Online Article Text |
id | pubmed-7800006 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78000062021-01-19 Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) Wang, Rui-Hong Gao, Jing Wu, Xue Li, Meng-Di Shen, Chao Wu, Jun-Jie Yu, Wen-Di Liu, Jin-Liang Qi, Zhe-Chen Liang, Zong-Suo Mitochondrial DNA B Resour Mitogenome Announcement Tricyrtis (Liliaceae) is an endemic genus in East Asia. Many of the species in the genus are in Endangered condition due to habitat loss and extensive horticultural usage in recent decades. In present study, we reported the first Tricyrtis chloroplast (cp) genome, Tricyrtis macropoda, based on Illumina pair-end sequencing data. The complete chloroplast genome size is 155,778 bp. In total, 131 genes were identified, including 85 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Fifteen genes are containing introns (clpP and ycf3 contained two introns) and 14 genes had two copies. The overall GC content of this genome was 37.4%. A further phylogenomic analysis of Liliales, including 62 taxa, was conducted for the placement of genus Tricyrtis. The complete plastome of T. marcropoda will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies in the genus and family. Taylor & Francis 2018-01-26 /pmc/articles/PMC7800006/ /pubmed/33474100 http://dx.doi.org/10.1080/23802359.2018.1431069 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Rui-Hong Gao, Jing Wu, Xue Li, Meng-Di Shen, Chao Wu, Jun-Jie Yu, Wen-Di Liu, Jin-Liang Qi, Zhe-Chen Liang, Zong-Suo Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) |
title | Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) |
title_full | Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) |
title_fullStr | Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) |
title_short | Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) |
title_sort | characterization of the complete chloroplast genome of toad lily tricyrtis macropoda (liliaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800006/ https://www.ncbi.nlm.nih.gov/pubmed/33474100 http://dx.doi.org/10.1080/23802359.2018.1431069 |
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