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Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)

Tricyrtis (Liliaceae) is an endemic genus in East Asia. Many of the species in the genus are in Endangered condition due to habitat loss and extensive horticultural usage in recent decades. In present study, we reported the first Tricyrtis chloroplast (cp) genome, Tricyrtis macropoda, based on Illum...

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Autores principales: Wang, Rui-Hong, Gao, Jing, Wu, Xue, Li, Meng-Di, Shen, Chao, Wu, Jun-Jie, Yu, Wen-Di, Liu, Jin-Liang, Qi, Zhe-Chen, Liang, Zong-Suo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800006/
https://www.ncbi.nlm.nih.gov/pubmed/33474100
http://dx.doi.org/10.1080/23802359.2018.1431069
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author Wang, Rui-Hong
Gao, Jing
Wu, Xue
Li, Meng-Di
Shen, Chao
Wu, Jun-Jie
Yu, Wen-Di
Liu, Jin-Liang
Qi, Zhe-Chen
Liang, Zong-Suo
author_facet Wang, Rui-Hong
Gao, Jing
Wu, Xue
Li, Meng-Di
Shen, Chao
Wu, Jun-Jie
Yu, Wen-Di
Liu, Jin-Liang
Qi, Zhe-Chen
Liang, Zong-Suo
author_sort Wang, Rui-Hong
collection PubMed
description Tricyrtis (Liliaceae) is an endemic genus in East Asia. Many of the species in the genus are in Endangered condition due to habitat loss and extensive horticultural usage in recent decades. In present study, we reported the first Tricyrtis chloroplast (cp) genome, Tricyrtis macropoda, based on Illumina pair-end sequencing data. The complete chloroplast genome size is 155,778 bp. In total, 131 genes were identified, including 85 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Fifteen genes are containing introns (clpP and ycf3 contained two introns) and 14 genes had two copies. The overall GC content of this genome was 37.4%. A further phylogenomic analysis of Liliales, including 62 taxa, was conducted for the placement of genus Tricyrtis. The complete plastome of T. marcropoda will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies in the genus and family.
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spelling pubmed-78000062021-01-19 Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae) Wang, Rui-Hong Gao, Jing Wu, Xue Li, Meng-Di Shen, Chao Wu, Jun-Jie Yu, Wen-Di Liu, Jin-Liang Qi, Zhe-Chen Liang, Zong-Suo Mitochondrial DNA B Resour Mitogenome Announcement Tricyrtis (Liliaceae) is an endemic genus in East Asia. Many of the species in the genus are in Endangered condition due to habitat loss and extensive horticultural usage in recent decades. In present study, we reported the first Tricyrtis chloroplast (cp) genome, Tricyrtis macropoda, based on Illumina pair-end sequencing data. The complete chloroplast genome size is 155,778 bp. In total, 131 genes were identified, including 85 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Fifteen genes are containing introns (clpP and ycf3 contained two introns) and 14 genes had two copies. The overall GC content of this genome was 37.4%. A further phylogenomic analysis of Liliales, including 62 taxa, was conducted for the placement of genus Tricyrtis. The complete plastome of T. marcropoda will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies in the genus and family. Taylor & Francis 2018-01-26 /pmc/articles/PMC7800006/ /pubmed/33474100 http://dx.doi.org/10.1080/23802359.2018.1431069 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Rui-Hong
Gao, Jing
Wu, Xue
Li, Meng-Di
Shen, Chao
Wu, Jun-Jie
Yu, Wen-Di
Liu, Jin-Liang
Qi, Zhe-Chen
Liang, Zong-Suo
Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)
title Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)
title_full Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)
title_fullStr Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)
title_short Characterization of the complete chloroplast genome of toad lily Tricyrtis Macropoda (Liliaceae)
title_sort characterization of the complete chloroplast genome of toad lily tricyrtis macropoda (liliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800006/
https://www.ncbi.nlm.nih.gov/pubmed/33474100
http://dx.doi.org/10.1080/23802359.2018.1431069
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