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The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae)
We characterized the complete chloroplast genome sequence of Ligularia fischeri, a collection from Halla Mountain in Jeju Island, Korea. The plants are utilized as edible functional plant species harbouring useful antioxidant compounds in family Asteraceae. De novo assembly with whole genome sequenc...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800012/ https://www.ncbi.nlm.nih.gov/pubmed/33473386 http://dx.doi.org/10.1080/23802359.2015.1137793 |
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author | Lee, Jonghoon Lee, Hana Lee, Sang-Choon Sung, Sang Hyun Kang, Jung Hwa Lee, Taek Joo Yang, Tae-Jin |
author_facet | Lee, Jonghoon Lee, Hana Lee, Sang-Choon Sung, Sang Hyun Kang, Jung Hwa Lee, Taek Joo Yang, Tae-Jin |
author_sort | Lee, Jonghoon |
collection | PubMed |
description | We characterized the complete chloroplast genome sequence of Ligularia fischeri, a collection from Halla Mountain in Jeju Island, Korea. The plants are utilized as edible functional plant species harbouring useful antioxidant compounds in family Asteraceae. De novo assembly with whole genome sequencing data of L. fischeri completed the chloroplast genome of 151 133 bp long, which included two inverted repeats (IRs) blocks of 24 831 bp, separated by the large single-copy block of 83 238 bp and small single-copy block of 18 233 bp. The genome encoded 113 genes consisting of 80 protein-coding genes, 29 tRNA genes and 4 rRNA genes. Phylogenetic analysis with protein coding gene sequences of reported Asteraceae chloroplast genomes revealed a close relationship of L. fischeri with Jacobaea vulgaris, a weed species world-widely distributed. |
format | Online Article Text |
id | pubmed-7800012 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78000122021-01-19 The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae) Lee, Jonghoon Lee, Hana Lee, Sang-Choon Sung, Sang Hyun Kang, Jung Hwa Lee, Taek Joo Yang, Tae-Jin Mitochondrial DNA B Resour Mitogenome Announcement We characterized the complete chloroplast genome sequence of Ligularia fischeri, a collection from Halla Mountain in Jeju Island, Korea. The plants are utilized as edible functional plant species harbouring useful antioxidant compounds in family Asteraceae. De novo assembly with whole genome sequencing data of L. fischeri completed the chloroplast genome of 151 133 bp long, which included two inverted repeats (IRs) blocks of 24 831 bp, separated by the large single-copy block of 83 238 bp and small single-copy block of 18 233 bp. The genome encoded 113 genes consisting of 80 protein-coding genes, 29 tRNA genes and 4 rRNA genes. Phylogenetic analysis with protein coding gene sequences of reported Asteraceae chloroplast genomes revealed a close relationship of L. fischeri with Jacobaea vulgaris, a weed species world-widely distributed. Taylor & Francis 2016-02-01 /pmc/articles/PMC7800012/ /pubmed/33473386 http://dx.doi.org/10.1080/23802359.2015.1137793 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Lee, Jonghoon Lee, Hana Lee, Sang-Choon Sung, Sang Hyun Kang, Jung Hwa Lee, Taek Joo Yang, Tae-Jin The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae) |
title | The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae) |
title_full | The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae) |
title_fullStr | The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae) |
title_short | The complete chloroplast genome sequence of Ligularia fischeri (Ledeb.) Turcz. (Asteraceae) |
title_sort | complete chloroplast genome sequence of ligularia fischeri (ledeb.) turcz. (asteraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800012/ https://www.ncbi.nlm.nih.gov/pubmed/33473386 http://dx.doi.org/10.1080/23802359.2015.1137793 |
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