Cargando…
Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia
Dracaena cambodiana (Asparagaceae) is a treelike plant ranging from 3 to 10 m tall. It grows in low-elevation forests (0–300 m) having dry and sandy soils. It is distributed in Southern Hainan Island in China and other Southeast Asian countries (e.g. Cambodia, Laos, Thailand and Vietnam). The dried...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800030/ https://www.ncbi.nlm.nih.gov/pubmed/33474263 http://dx.doi.org/10.1080/23802359.2018.1473740 |
_version_ | 1783635259378630656 |
---|---|
author | Zhu, Zhi-Xin Mu, Wei-Xue Wang, Jian-Hua Zhang, Jin-Ran Zhao, Kun-Kun Ross Friedman, Cynthia Wang, Hua-Feng |
author_facet | Zhu, Zhi-Xin Mu, Wei-Xue Wang, Jian-Hua Zhang, Jin-Ran Zhao, Kun-Kun Ross Friedman, Cynthia Wang, Hua-Feng |
author_sort | Zhu, Zhi-Xin |
collection | PubMed |
description | Dracaena cambodiana (Asparagaceae) is a treelike plant ranging from 3 to 10 m tall. It grows in low-elevation forests (0–300 m) having dry and sandy soils. It is distributed in Southern Hainan Island in China and other Southeast Asian countries (e.g. Cambodia, Laos, Thailand and Vietnam). The dried resin can be used medicinally as a substitute for that of Dracaena cochinchinensis. It has been ranked as a Vulnerable (VU) species in China. Here we report and characterize the complete plastid genome sequence of D. cambodiana. The complete plastome is 156,697 bp in length. It contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,526 bp, a Large Single-Copy (LSC) region of 84,988 bp and a Small Single-Copy (SSC) region of 18,657 bp. The plastome contains 113 genes, consisting of 76 unique protein-coding genes, 30 unique tRNA genes, four unique rRNA genes and three pseudogenes (i.e. matK, infA, ndhF). The overall A/T content in the plastome of D. cambodiana is 62.4%. We performed phylogenetic analyses using the entire plastome, including spacers, introns, etc., and we determined that D. cambodiana and Maianthemum bicolor were closely related. The complete plastome sequence of D. cambodiana will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Asparagales. |
format | Online Article Text |
id | pubmed-7800030 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78000302021-01-19 Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia Zhu, Zhi-Xin Mu, Wei-Xue Wang, Jian-Hua Zhang, Jin-Ran Zhao, Kun-Kun Ross Friedman, Cynthia Wang, Hua-Feng Mitochondrial DNA B Resour Mitogenome Announcement Dracaena cambodiana (Asparagaceae) is a treelike plant ranging from 3 to 10 m tall. It grows in low-elevation forests (0–300 m) having dry and sandy soils. It is distributed in Southern Hainan Island in China and other Southeast Asian countries (e.g. Cambodia, Laos, Thailand and Vietnam). The dried resin can be used medicinally as a substitute for that of Dracaena cochinchinensis. It has been ranked as a Vulnerable (VU) species in China. Here we report and characterize the complete plastid genome sequence of D. cambodiana. The complete plastome is 156,697 bp in length. It contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,526 bp, a Large Single-Copy (LSC) region of 84,988 bp and a Small Single-Copy (SSC) region of 18,657 bp. The plastome contains 113 genes, consisting of 76 unique protein-coding genes, 30 unique tRNA genes, four unique rRNA genes and three pseudogenes (i.e. matK, infA, ndhF). The overall A/T content in the plastome of D. cambodiana is 62.4%. We performed phylogenetic analyses using the entire plastome, including spacers, introns, etc., and we determined that D. cambodiana and Maianthemum bicolor were closely related. The complete plastome sequence of D. cambodiana will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Asparagales. Taylor & Francis 2018-05-21 /pmc/articles/PMC7800030/ /pubmed/33474263 http://dx.doi.org/10.1080/23802359.2018.1473740 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Zhu, Zhi-Xin Mu, Wei-Xue Wang, Jian-Hua Zhang, Jin-Ran Zhao, Kun-Kun Ross Friedman, Cynthia Wang, Hua-Feng Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia |
title | Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia |
title_full | Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia |
title_fullStr | Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia |
title_full_unstemmed | Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia |
title_short | Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered “Vulnerable” in Southeast Asia |
title_sort | complete plastome sequence of dracaena cambodiana (asparagaceae): a species considered “vulnerable” in southeast asia |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800030/ https://www.ncbi.nlm.nih.gov/pubmed/33474263 http://dx.doi.org/10.1080/23802359.2018.1473740 |
work_keys_str_mv | AT zhuzhixin completeplastomesequenceofdracaenacambodianaasparagaceaeaspeciesconsideredvulnerableinsoutheastasia AT muweixue completeplastomesequenceofdracaenacambodianaasparagaceaeaspeciesconsideredvulnerableinsoutheastasia AT wangjianhua completeplastomesequenceofdracaenacambodianaasparagaceaeaspeciesconsideredvulnerableinsoutheastasia AT zhangjinran completeplastomesequenceofdracaenacambodianaasparagaceaeaspeciesconsideredvulnerableinsoutheastasia AT zhaokunkun completeplastomesequenceofdracaenacambodianaasparagaceaeaspeciesconsideredvulnerableinsoutheastasia AT rossfriedmancynthia completeplastomesequenceofdracaenacambodianaasparagaceaeaspeciesconsideredvulnerableinsoutheastasia AT wanghuafeng completeplastomesequenceofdracaenacambodianaasparagaceaeaspeciesconsideredvulnerableinsoutheastasia |