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Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins
Leporinus elongatus is an important commercial fish found in the La Plata and Paraná River basins. Next-generation sequencing was used to sequence the mitochondrial DNA (mtDNA) of L. elongatus. The mtDNA was assembled using the CLC Workbench software v. 9.0 and subsequently aligned to other 10 compl...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800035/ https://www.ncbi.nlm.nih.gov/pubmed/33473792 http://dx.doi.org/10.1080/23802359.2017.1318685 |
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author | Bedore, Alessandra Gomes Resende, Leonardo Cardoso do Carmo, Anderson Oliveira Nuñez Rodriguez, Daniela Martins, Ana Paula Vimieiro Kalapothakis, Evanguedes |
author_facet | Bedore, Alessandra Gomes Resende, Leonardo Cardoso do Carmo, Anderson Oliveira Nuñez Rodriguez, Daniela Martins, Ana Paula Vimieiro Kalapothakis, Evanguedes |
author_sort | Bedore, Alessandra Gomes |
collection | PubMed |
description | Leporinus elongatus is an important commercial fish found in the La Plata and Paraná River basins. Next-generation sequencing was used to sequence the mitochondrial DNA (mtDNA) of L. elongatus. The mtDNA was assembled using the CLC Workbench software v. 9.0 and subsequently aligned to other 10 complete fish mitochondrial sequences to enable phylogenetic analysis using MEGA 7.0. The complete mtDNA molecule had 16,784 bp and its GC content was 43%. The mtDNA structure was similar to that of other vertebrates: two ribosomal RNA, 22 transfer RNA, 13 protein-coding genes, and a D-loop region containing 1115 bp. Phylogenetic analysis yielded a tree with high bootstrap value that was coherent with the current phylogeny proposed for Characiformes. |
format | Online Article Text |
id | pubmed-7800035 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78000352021-01-19 Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins Bedore, Alessandra Gomes Resende, Leonardo Cardoso do Carmo, Anderson Oliveira Nuñez Rodriguez, Daniela Martins, Ana Paula Vimieiro Kalapothakis, Evanguedes Mitochondrial DNA B Resour Mitogenome Announcement Leporinus elongatus is an important commercial fish found in the La Plata and Paraná River basins. Next-generation sequencing was used to sequence the mitochondrial DNA (mtDNA) of L. elongatus. The mtDNA was assembled using the CLC Workbench software v. 9.0 and subsequently aligned to other 10 complete fish mitochondrial sequences to enable phylogenetic analysis using MEGA 7.0. The complete mtDNA molecule had 16,784 bp and its GC content was 43%. The mtDNA structure was similar to that of other vertebrates: two ribosomal RNA, 22 transfer RNA, 13 protein-coding genes, and a D-loop region containing 1115 bp. Phylogenetic analysis yielded a tree with high bootstrap value that was coherent with the current phylogeny proposed for Characiformes. Taylor & Francis 2017-05-09 /pmc/articles/PMC7800035/ /pubmed/33473792 http://dx.doi.org/10.1080/23802359.2017.1318685 Text en © 2017 Universidade Federal de Minas Gerais http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Bedore, Alessandra Gomes Resende, Leonardo Cardoso do Carmo, Anderson Oliveira Nuñez Rodriguez, Daniela Martins, Ana Paula Vimieiro Kalapothakis, Evanguedes Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins |
title | Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins |
title_full | Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins |
title_fullStr | Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins |
title_full_unstemmed | Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins |
title_short | Leporinus elongatus (Characiformes, Anostomidae): complete mtDNA sequence of an economically important fish from the Paraná and La Plata river basins |
title_sort | leporinus elongatus (characiformes, anostomidae): complete mtdna sequence of an economically important fish from the paraná and la plata river basins |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800035/ https://www.ncbi.nlm.nih.gov/pubmed/33473792 http://dx.doi.org/10.1080/23802359.2017.1318685 |
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