The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species

Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a leng...

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Detalles Bibliográficos
Autores principales: Cho, Kwang-Soo, Cho, Ji-Hong, Im, Ju-Sung, Choi, Jang-Gyu, Park, Young-Eun, Jang, Dong-Chil, Hong, Su-Young, Park, Tae-Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800044/
https://www.ncbi.nlm.nih.gov/pubmed/33474312
http://dx.doi.org/10.1080/23802359.2018.1491342
Descripción
Sumario:Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum.

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