The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species

Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a leng...

Descripción completa

Detalles Bibliográficos
Autores principales: Cho, Kwang-Soo, Cho, Ji-Hong, Im, Ju-Sung, Choi, Jang-Gyu, Park, Young-Eun, Jang, Dong-Chil, Hong, Su-Young, Park, Tae-Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800044/
https://www.ncbi.nlm.nih.gov/pubmed/33474312
http://dx.doi.org/10.1080/23802359.2018.1491342
_version_ 1783635262506532864
author Cho, Kwang-Soo
Cho, Ji-Hong
Im, Ju-Sung
Choi, Jang-Gyu
Park, Young-Eun
Jang, Dong-Chil
Hong, Su-Young
Park, Tae-Ho
author_facet Cho, Kwang-Soo
Cho, Ji-Hong
Im, Ju-Sung
Choi, Jang-Gyu
Park, Young-Eun
Jang, Dong-Chil
Hong, Su-Young
Park, Tae-Ho
author_sort Cho, Kwang-Soo
collection PubMed
description Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum.
format Online
Article
Text
id pubmed-7800044
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78000442021-01-19 The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species Cho, Kwang-Soo Cho, Ji-Hong Im, Ju-Sung Choi, Jang-Gyu Park, Young-Eun Jang, Dong-Chil Hong, Su-Young Park, Tae-Ho Mitochondrial DNA B Resour Mitogenome Announcement Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum. Taylor & Francis 2018-07-11 /pmc/articles/PMC7800044/ /pubmed/33474312 http://dx.doi.org/10.1080/23802359.2018.1491342 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Cho, Kwang-Soo
Cho, Ji-Hong
Im, Ju-Sung
Choi, Jang-Gyu
Park, Young-Eun
Jang, Dong-Chil
Hong, Su-Young
Park, Tae-Ho
The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species
title The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species
title_full The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species
title_fullStr The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species
title_full_unstemmed The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species
title_short The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species
title_sort complete chloroplast genome sequence of solanum hougasii, one of the potato wild relative species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800044/
https://www.ncbi.nlm.nih.gov/pubmed/33474312
http://dx.doi.org/10.1080/23802359.2018.1491342
work_keys_str_mv AT chokwangsoo thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT chojihong thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT imjusung thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT choijanggyu thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT parkyoungeun thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT jangdongchil thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT hongsuyoung thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT parktaeho thecompletechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT chokwangsoo completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT chojihong completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT imjusung completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT choijanggyu completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT parkyoungeun completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT jangdongchil completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT hongsuyoung completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies
AT parktaeho completechloroplastgenomesequenceofsolanumhougasiioneofthepotatowildrelativespecies

Ejemplares similares