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The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis
Here, we report the complete mitochondrial genome sequence of Alaska Pollock, Gadus chalcogramma. The genome sequence was obtained via long PCR reactions using universal primer sets for the fish mitochondrial genome. The total length of mitochondrial genome was 16,571 bp, consisting of 13 protein-co...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800057/ https://www.ncbi.nlm.nih.gov/pubmed/33474203 http://dx.doi.org/10.1080/23802359.2018.1462118 |
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author | Sim, Han-Kyeol Yu, Jeong-Nam Jin, Deuk-Hee |
author_facet | Sim, Han-Kyeol Yu, Jeong-Nam Jin, Deuk-Hee |
author_sort | Sim, Han-Kyeol |
collection | PubMed |
description | Here, we report the complete mitochondrial genome sequence of Alaska Pollock, Gadus chalcogramma. The genome sequence was obtained via long PCR reactions using universal primer sets for the fish mitochondrial genome. The total length of mitochondrial genome was 16,571 bp, consisting of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and one control region (D-loop). Except for ND6 and eight tRNA genes, all of the other mitochondrial genes were encoded on the heavy strand. The NJ tree of the combined 13 protein-coding gene sequences of Gadus chalcogramma possesses a relatively closer relationship with the Okhotsk Sea Pollock (Gadus chalcogrammus). Our complete mitochondrial genome will be valuable resources for phylogeny, genetics, and conservation of the Gadus chalcogramma in Korea. |
format | Online Article Text |
id | pubmed-7800057 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78000572021-01-19 The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis Sim, Han-Kyeol Yu, Jeong-Nam Jin, Deuk-Hee Mitochondrial DNA B Resour Mitogenome Announcement Here, we report the complete mitochondrial genome sequence of Alaska Pollock, Gadus chalcogramma. The genome sequence was obtained via long PCR reactions using universal primer sets for the fish mitochondrial genome. The total length of mitochondrial genome was 16,571 bp, consisting of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and one control region (D-loop). Except for ND6 and eight tRNA genes, all of the other mitochondrial genes were encoded on the heavy strand. The NJ tree of the combined 13 protein-coding gene sequences of Gadus chalcogramma possesses a relatively closer relationship with the Okhotsk Sea Pollock (Gadus chalcogrammus). Our complete mitochondrial genome will be valuable resources for phylogeny, genetics, and conservation of the Gadus chalcogramma in Korea. Taylor & Francis 2018-04-12 /pmc/articles/PMC7800057/ /pubmed/33474203 http://dx.doi.org/10.1080/23802359.2018.1462118 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Sim, Han-Kyeol Yu, Jeong-Nam Jin, Deuk-Hee The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis |
title | The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis |
title_full | The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis |
title_fullStr | The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis |
title_full_unstemmed | The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis |
title_short | The complete mitochondrial genome of Gadus chalcogramma and phylogenetic analysis |
title_sort | complete mitochondrial genome of gadus chalcogramma and phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800057/ https://www.ncbi.nlm.nih.gov/pubmed/33474203 http://dx.doi.org/10.1080/23802359.2018.1462118 |
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