The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’

Here, we reported and characterized the complete chloroplast (cp) genome sequence of Dendrobium officinale‘ zhong ke IV hao’, a new variety from self-cross plants of imported Sichuan D. officinale, obtained exclusively using Illumina and PacBio sequencing technology. The genome size is 152,185 bp, c...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhong, Zhimin, Zhang, Guifang, Lai, Xiaoping, Huang, Song
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800078/
https://www.ncbi.nlm.nih.gov/pubmed/33473591
http://dx.doi.org/10.1080/23802359.2016.1219632
_version_ 1783635269984976896
author Zhong, Zhimin
Zhang, Guifang
Lai, Xiaoping
Huang, Song
author_facet Zhong, Zhimin
Zhang, Guifang
Lai, Xiaoping
Huang, Song
author_sort Zhong, Zhimin
collection PubMed
description Here, we reported and characterized the complete chloroplast (cp) genome sequence of Dendrobium officinale‘ zhong ke IV hao’, a new variety from self-cross plants of imported Sichuan D. officinale, obtained exclusively using Illumina and PacBio sequencing technology. The genome size is 152,185 bp, containing a large single copy (LSC) region (85,094 bp) and a small single copy(SSC) region (14,521 bp) that were separated by two inverted repeat (IRs) regions (26,285 bp).The GC content was 37.46%. In total, the complete cp DNA contains 89 protein-coding genes, 30 tRNA genes, and 8 rRNA genes. Twelve genes contained one or two introns. Phylogenetic analyses showed that the chloroplast genome of D officinale ‘zhong ke IV hao’ is related to that of the traditional D.officinale.
format Online
Article
Text
id pubmed-7800078
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78000782021-01-19 The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’ Zhong, Zhimin Zhang, Guifang Lai, Xiaoping Huang, Song Mitochondrial DNA B Resour Mitogenome Announcement Here, we reported and characterized the complete chloroplast (cp) genome sequence of Dendrobium officinale‘ zhong ke IV hao’, a new variety from self-cross plants of imported Sichuan D. officinale, obtained exclusively using Illumina and PacBio sequencing technology. The genome size is 152,185 bp, containing a large single copy (LSC) region (85,094 bp) and a small single copy(SSC) region (14,521 bp) that were separated by two inverted repeat (IRs) regions (26,285 bp).The GC content was 37.46%. In total, the complete cp DNA contains 89 protein-coding genes, 30 tRNA genes, and 8 rRNA genes. Twelve genes contained one or two introns. Phylogenetic analyses showed that the chloroplast genome of D officinale ‘zhong ke IV hao’ is related to that of the traditional D.officinale. Taylor & Francis 2016-09-02 /pmc/articles/PMC7800078/ /pubmed/33473591 http://dx.doi.org/10.1080/23802359.2016.1219632 Text en © 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhong, Zhimin
Zhang, Guifang
Lai, Xiaoping
Huang, Song
The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’
title The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’
title_full The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’
title_fullStr The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’
title_full_unstemmed The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’
title_short The complete chloroplast genome sequence of a new variety of Dendrobium officinale ‘zhong ke IV hao’
title_sort complete chloroplast genome sequence of a new variety of dendrobium officinale ‘zhong ke iv hao’
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800078/
https://www.ncbi.nlm.nih.gov/pubmed/33473591
http://dx.doi.org/10.1080/23802359.2016.1219632
work_keys_str_mv AT zhongzhimin thecompletechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao
AT zhangguifang thecompletechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao
AT laixiaoping thecompletechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao
AT huangsong thecompletechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao
AT zhongzhimin completechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao
AT zhangguifang completechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao
AT laixiaoping completechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao
AT huangsong completechloroplastgenomesequenceofanewvarietyofdendrobiumofficinalezhongkeivhao

Ejemplares similares