Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China

Camellia granthamiana is a wild camellia resource endemic to China and is listed as a Vulnerable species globally. Here, we reported and characterized its complete chloroplast (cp) genome by using Illumina pair-end sequencing data. The total chloroplast genome size was 157,001 bp, including inverted...

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Autores principales: Li, Weixi, Shi, Xianggang, Guo, Wuxia, Banerjee, Achyut Kumar, Zhang, Qun, Huang, Yelin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800109/
https://www.ncbi.nlm.nih.gov/pubmed/33474444
http://dx.doi.org/10.1080/23802359.2018.1521310
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author Li, Weixi
Shi, Xianggang
Guo, Wuxia
Banerjee, Achyut Kumar
Zhang, Qun
Huang, Yelin
author_facet Li, Weixi
Shi, Xianggang
Guo, Wuxia
Banerjee, Achyut Kumar
Zhang, Qun
Huang, Yelin
author_sort Li, Weixi
collection PubMed
description Camellia granthamiana is a wild camellia resource endemic to China and is listed as a Vulnerable species globally. Here, we reported and characterized its complete chloroplast (cp) genome by using Illumina pair-end sequencing data. The total chloroplast genome size was 157,001 bp, including inverted repeats (IRs) of 26,042 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 86,622 and 18,295 bp, respectively. A total of 131 genes, including 36 tRNA, 8 Rrna, and 87 protein-coding genes were identified. Phylogenetic analysis showed that C. granthamiana is sister to C. sinensis with 100% value support.
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spelling pubmed-78001092021-01-19 Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China Li, Weixi Shi, Xianggang Guo, Wuxia Banerjee, Achyut Kumar Zhang, Qun Huang, Yelin Mitochondrial DNA B Resour Mitogenome Announcement Camellia granthamiana is a wild camellia resource endemic to China and is listed as a Vulnerable species globally. Here, we reported and characterized its complete chloroplast (cp) genome by using Illumina pair-end sequencing data. The total chloroplast genome size was 157,001 bp, including inverted repeats (IRs) of 26,042 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 86,622 and 18,295 bp, respectively. A total of 131 genes, including 36 tRNA, 8 Rrna, and 87 protein-coding genes were identified. Phylogenetic analysis showed that C. granthamiana is sister to C. sinensis with 100% value support. Taylor & Francis 2018-10-29 /pmc/articles/PMC7800109/ /pubmed/33474444 http://dx.doi.org/10.1080/23802359.2018.1521310 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Weixi
Shi, Xianggang
Guo, Wuxia
Banerjee, Achyut Kumar
Zhang, Qun
Huang, Yelin
Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China
title Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China
title_full Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China
title_fullStr Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China
title_full_unstemmed Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China
title_short Characterization of the complete chloroplast genome of Camellia granthamiana (Theaceae), a Vulnerable species endemic to China
title_sort characterization of the complete chloroplast genome of camellia granthamiana (theaceae), a vulnerable species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800109/
https://www.ncbi.nlm.nih.gov/pubmed/33474444
http://dx.doi.org/10.1080/23802359.2018.1521310
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