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Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India
Geoemydid turtles are one of the most imperilled fauna on the planet, with nearly half of them are threatened with extinction due to bushmeat crisis, traditional medicine, and the illegal pet trade. Classical taxonomy often fails to identify the pet-kept turtle specimens due to amorphous form, unusu...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800124/ https://www.ncbi.nlm.nih.gov/pubmed/33474223 http://dx.doi.org/10.1080/23802359.2018.1467215 |
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author | Kundu, Shantanu Kumar, Vikas Laskar, Boni Amin Tyagi, Kaomud Chandra, Kailash |
author_facet | Kundu, Shantanu Kumar, Vikas Laskar, Boni Amin Tyagi, Kaomud Chandra, Kailash |
author_sort | Kundu, Shantanu |
collection | PubMed |
description | Geoemydid turtles are one of the most imperilled fauna on the planet, with nearly half of them are threatened with extinction due to bushmeat crisis, traditional medicine, and the illegal pet trade. Classical taxonomy often fails to identify the pet-kept turtle specimens due to amorphous form, unusual shell colouration owing to poor storage in captivity or intensely tinted for high demanding value. The DNA barcoding technique has evidenced as a supportive tool for accurate species identification in systematics research and discerned the nameless taxa in forensic sciences. We tested the effectiveness of DNA barcoding tools for identifying the pet-kept Geoemydid turtle in northeast India. The 36 generated sequences are readily delineated into 12 Geoemydid species using molecular data. The overall mean genetic distance of the studied Geoemydid turtles dataset is 15.3% and ranges from 3.4% to 22.6% between the species. The NJ, ML and Bayesian phylogeny also resulted monophyletic clustering and discriminated all the studied species. The present study contributes DNA barcode sequences of Geoemydid turtles in the global database and also affirms the on-going illegal pet trade of highly threatened species in northeast India. |
format | Online Article Text |
id | pubmed-7800124 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78001242021-01-19 Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India Kundu, Shantanu Kumar, Vikas Laskar, Boni Amin Tyagi, Kaomud Chandra, Kailash Mitochondrial DNA B Resour Mito Communication Geoemydid turtles are one of the most imperilled fauna on the planet, with nearly half of them are threatened with extinction due to bushmeat crisis, traditional medicine, and the illegal pet trade. Classical taxonomy often fails to identify the pet-kept turtle specimens due to amorphous form, unusual shell colouration owing to poor storage in captivity or intensely tinted for high demanding value. The DNA barcoding technique has evidenced as a supportive tool for accurate species identification in systematics research and discerned the nameless taxa in forensic sciences. We tested the effectiveness of DNA barcoding tools for identifying the pet-kept Geoemydid turtle in northeast India. The 36 generated sequences are readily delineated into 12 Geoemydid species using molecular data. The overall mean genetic distance of the studied Geoemydid turtles dataset is 15.3% and ranges from 3.4% to 22.6% between the species. The NJ, ML and Bayesian phylogeny also resulted monophyletic clustering and discriminated all the studied species. The present study contributes DNA barcode sequences of Geoemydid turtles in the global database and also affirms the on-going illegal pet trade of highly threatened species in northeast India. Taylor & Francis 2018-04-26 /pmc/articles/PMC7800124/ /pubmed/33474223 http://dx.doi.org/10.1080/23802359.2018.1467215 Text en © 2018 Zoological Survey of India. Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mito Communication Kundu, Shantanu Kumar, Vikas Laskar, Boni Amin Tyagi, Kaomud Chandra, Kailash Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India |
title | Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India |
title_full | Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India |
title_fullStr | Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India |
title_full_unstemmed | Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India |
title_short | Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India |
title_sort | pet and turtle: dna barcoding identified twelve geoemydid species in northeast india |
topic | Mito Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800124/ https://www.ncbi.nlm.nih.gov/pubmed/33474223 http://dx.doi.org/10.1080/23802359.2018.1467215 |
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