Cargando…

Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India

Geoemydid turtles are one of the most imperilled fauna on the planet, with nearly half of them are threatened with extinction due to bushmeat crisis, traditional medicine, and the illegal pet trade. Classical taxonomy often fails to identify the pet-kept turtle specimens due to amorphous form, unusu...

Descripción completa

Detalles Bibliográficos
Autores principales: Kundu, Shantanu, Kumar, Vikas, Laskar, Boni Amin, Tyagi, Kaomud, Chandra, Kailash
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800124/
https://www.ncbi.nlm.nih.gov/pubmed/33474223
http://dx.doi.org/10.1080/23802359.2018.1467215
_version_ 1783635280857661440
author Kundu, Shantanu
Kumar, Vikas
Laskar, Boni Amin
Tyagi, Kaomud
Chandra, Kailash
author_facet Kundu, Shantanu
Kumar, Vikas
Laskar, Boni Amin
Tyagi, Kaomud
Chandra, Kailash
author_sort Kundu, Shantanu
collection PubMed
description Geoemydid turtles are one of the most imperilled fauna on the planet, with nearly half of them are threatened with extinction due to bushmeat crisis, traditional medicine, and the illegal pet trade. Classical taxonomy often fails to identify the pet-kept turtle specimens due to amorphous form, unusual shell colouration owing to poor storage in captivity or intensely tinted for high demanding value. The DNA barcoding technique has evidenced as a supportive tool for accurate species identification in systematics research and discerned the nameless taxa in forensic sciences. We tested the effectiveness of DNA barcoding tools for identifying the pet-kept Geoemydid turtle in northeast India. The 36 generated sequences are readily delineated into 12 Geoemydid species using molecular data. The overall mean genetic distance of the studied Geoemydid turtles dataset is 15.3% and ranges from 3.4% to 22.6% between the species. The NJ, ML and Bayesian phylogeny also resulted monophyletic clustering and discriminated all the studied species. The present study contributes DNA barcode sequences of Geoemydid turtles in the global database and also affirms the on-going illegal pet trade of highly threatened species in northeast India.
format Online
Article
Text
id pubmed-7800124
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78001242021-01-19 Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India Kundu, Shantanu Kumar, Vikas Laskar, Boni Amin Tyagi, Kaomud Chandra, Kailash Mitochondrial DNA B Resour Mito Communication Geoemydid turtles are one of the most imperilled fauna on the planet, with nearly half of them are threatened with extinction due to bushmeat crisis, traditional medicine, and the illegal pet trade. Classical taxonomy often fails to identify the pet-kept turtle specimens due to amorphous form, unusual shell colouration owing to poor storage in captivity or intensely tinted for high demanding value. The DNA barcoding technique has evidenced as a supportive tool for accurate species identification in systematics research and discerned the nameless taxa in forensic sciences. We tested the effectiveness of DNA barcoding tools for identifying the pet-kept Geoemydid turtle in northeast India. The 36 generated sequences are readily delineated into 12 Geoemydid species using molecular data. The overall mean genetic distance of the studied Geoemydid turtles dataset is 15.3% and ranges from 3.4% to 22.6% between the species. The NJ, ML and Bayesian phylogeny also resulted monophyletic clustering and discriminated all the studied species. The present study contributes DNA barcode sequences of Geoemydid turtles in the global database and also affirms the on-going illegal pet trade of highly threatened species in northeast India. Taylor & Francis 2018-04-26 /pmc/articles/PMC7800124/ /pubmed/33474223 http://dx.doi.org/10.1080/23802359.2018.1467215 Text en © 2018 Zoological Survey of India. Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mito Communication
Kundu, Shantanu
Kumar, Vikas
Laskar, Boni Amin
Tyagi, Kaomud
Chandra, Kailash
Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India
title Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India
title_full Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India
title_fullStr Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India
title_full_unstemmed Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India
title_short Pet and turtle: DNA barcoding identified twelve Geoemydid species in northeast India
title_sort pet and turtle: dna barcoding identified twelve geoemydid species in northeast india
topic Mito Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800124/
https://www.ncbi.nlm.nih.gov/pubmed/33474223
http://dx.doi.org/10.1080/23802359.2018.1467215
work_keys_str_mv AT kundushantanu petandturtlednabarcodingidentifiedtwelvegeoemydidspeciesinnortheastindia
AT kumarvikas petandturtlednabarcodingidentifiedtwelvegeoemydidspeciesinnortheastindia
AT laskarboniamin petandturtlednabarcodingidentifiedtwelvegeoemydidspeciesinnortheastindia
AT tyagikaomud petandturtlednabarcodingidentifiedtwelvegeoemydidspeciesinnortheastindia
AT chandrakailash petandturtlednabarcodingidentifiedtwelvegeoemydidspeciesinnortheastindia