Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing

The complete mitochondrial genome of Etroplus suratensis, the Green chromide cichlid, was determined for the first time through NGS method. The genome is 16,467 bp (Accession no. KU301747) in length and consisted of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and one control region. Organiz...

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Autores principales: Mohanta, Sudip K., Swain, Subrat K., Das, Sofia P., Bit, Amrita, Das, Gargee, Pradhan, Sanghamitra, Sundaray, Jitendra K., Jayasankar, P., Ninawe, A. S., Das, Paramananda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800130/
https://www.ncbi.nlm.nih.gov/pubmed/33473612
http://dx.doi.org/10.1080/23802359.2016.1176877
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author Mohanta, Sudip K.
Swain, Subrat K.
Das, Sofia P.
Bit, Amrita
Das, Gargee
Pradhan, Sanghamitra
Sundaray, Jitendra K.
Jayasankar, P.
Ninawe, A. S.
Das, Paramananda
author_facet Mohanta, Sudip K.
Swain, Subrat K.
Das, Sofia P.
Bit, Amrita
Das, Gargee
Pradhan, Sanghamitra
Sundaray, Jitendra K.
Jayasankar, P.
Ninawe, A. S.
Das, Paramananda
author_sort Mohanta, Sudip K.
collection PubMed
description The complete mitochondrial genome of Etroplus suratensis, the Green chromide cichlid, was determined for the first time through NGS method. The genome is 16,467 bp (Accession no. KU301747) in length and consisted of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and one control region. Organization of genes and their order are in accordance with other vertebrates. The overall base composition on plus strand was A: 28.3%, G: 15.2%, C: 30.9%, T: 25.6%, and the A + T content 53.9%. The control region contains a putative termination-associated sequence and three conserved sequence blocks. This mitogenome sequence data would play an important role in population genetics and phylogenetics of cichlid fish of India.
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spelling pubmed-78001302021-01-19 Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing Mohanta, Sudip K. Swain, Subrat K. Das, Sofia P. Bit, Amrita Das, Gargee Pradhan, Sanghamitra Sundaray, Jitendra K. Jayasankar, P. Ninawe, A. S. Das, Paramananda Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of Etroplus suratensis, the Green chromide cichlid, was determined for the first time through NGS method. The genome is 16,467 bp (Accession no. KU301747) in length and consisted of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and one control region. Organization of genes and their order are in accordance with other vertebrates. The overall base composition on plus strand was A: 28.3%, G: 15.2%, C: 30.9%, T: 25.6%, and the A + T content 53.9%. The control region contains a putative termination-associated sequence and three conserved sequence blocks. This mitogenome sequence data would play an important role in population genetics and phylogenetics of cichlid fish of India. Taylor & Francis 2016-11-21 /pmc/articles/PMC7800130/ /pubmed/33473612 http://dx.doi.org/10.1080/23802359.2016.1176877 Text en © 2016 ICAR-Central Institute of Freshwater Aquaculture. Published by Informa UK Limited, trading as Taylor & Francis. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Mohanta, Sudip K.
Swain, Subrat K.
Das, Sofia P.
Bit, Amrita
Das, Gargee
Pradhan, Sanghamitra
Sundaray, Jitendra K.
Jayasankar, P.
Ninawe, A. S.
Das, Paramananda
Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing
title Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing
title_full Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing
title_fullStr Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing
title_full_unstemmed Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing
title_short Complete mitochondrial genome sequence of E. suratensis revealed by next generation sequencing
title_sort complete mitochondrial genome sequence of e. suratensis revealed by next generation sequencing
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800130/
https://www.ncbi.nlm.nih.gov/pubmed/33473612
http://dx.doi.org/10.1080/23802359.2016.1176877
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