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The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae)

Chloroplast (cp) genome sequences have become a useful popular tool for population and phylogeny recently. It is little known about genetics information of Lavandula angustifolia. Here, the complete chloroplast genome of the L. angustifolia has been reconstructed from the whole-genome Illumina seque...

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Autor principal: Ma, Lan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800143/
https://www.ncbi.nlm.nih.gov/pubmed/33474095
http://dx.doi.org/10.1080/23802359.2018.1431067
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author Ma, Lan
author_facet Ma, Lan
author_sort Ma, Lan
collection PubMed
description Chloroplast (cp) genome sequences have become a useful popular tool for population and phylogeny recently. It is little known about genetics information of Lavandula angustifolia. Here, the complete chloroplast genome of the L. angustifolia has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 153,448 bp in size, and comprises of a pair of inverted repeat (IR) regions of 25,632 bp each, a large single-copy (LSC) region of 84,588 bp and a small single-copy (SSC) region of 17,596 bp. The total GC content is 38.0%, while the corresponding values of the LSC, SSC, and IR regions are 36.2, 31.8, and 43.2%, respectively. The chloroplast genome contains 132 genes, including 88 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The Maximum-Likelihood phylogenetic analysis showed a strong sister relationship with Salvia miltiorrhiza in Lamiaceae. These findings provide a foundation for further investigation of cp genome evolution in L. angustifolia and other higher plants.
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spelling pubmed-78001432021-01-19 The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae) Ma, Lan Mitochondrial DNA B Resour Mitogenome Announcement Chloroplast (cp) genome sequences have become a useful popular tool for population and phylogeny recently. It is little known about genetics information of Lavandula angustifolia. Here, the complete chloroplast genome of the L. angustifolia has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 153,448 bp in size, and comprises of a pair of inverted repeat (IR) regions of 25,632 bp each, a large single-copy (LSC) region of 84,588 bp and a small single-copy (SSC) region of 17,596 bp. The total GC content is 38.0%, while the corresponding values of the LSC, SSC, and IR regions are 36.2, 31.8, and 43.2%, respectively. The chloroplast genome contains 132 genes, including 88 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The Maximum-Likelihood phylogenetic analysis showed a strong sister relationship with Salvia miltiorrhiza in Lamiaceae. These findings provide a foundation for further investigation of cp genome evolution in L. angustifolia and other higher plants. Taylor & Francis 2018-01-24 /pmc/articles/PMC7800143/ /pubmed/33474095 http://dx.doi.org/10.1080/23802359.2018.1431067 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Ma, Lan
The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae)
title The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae)
title_full The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae)
title_fullStr The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae)
title_full_unstemmed The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae)
title_short The complete chloroplast genome sequence of the fragrant plant Lavandula angustifolia (Lamiaceae)
title_sort complete chloroplast genome sequence of the fragrant plant lavandula angustifolia (lamiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800143/
https://www.ncbi.nlm.nih.gov/pubmed/33474095
http://dx.doi.org/10.1080/23802359.2018.1431067
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