The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern

Pyrrosia bonii is an important ornamental and medical fern from Polypodiaceae. Its complete chloroplast genome sequence was characterized through de novo assembly with Illumina sequencing data. The genome size is 158,174 bp, with large single copy (LSC, 82,479 bp) and small single copy (SSC, 21,723 ...

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Detalles Bibliográficos
Autores principales: Cai, Shicheng, Cai, Xiang, Li, Shufeng, Liu, Shanshan, Wang, Zhen, Wang, Ting, Su, Yingjuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800146/
https://www.ncbi.nlm.nih.gov/pubmed/33474328
http://dx.doi.org/10.1080/23802359.2018.1491347
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author Cai, Shicheng
Cai, Xiang
Li, Shufeng
Liu, Shanshan
Wang, Zhen
Wang, Ting
Su, Yingjuan
author_facet Cai, Shicheng
Cai, Xiang
Li, Shufeng
Liu, Shanshan
Wang, Zhen
Wang, Ting
Su, Yingjuan
author_sort Cai, Shicheng
collection PubMed
description Pyrrosia bonii is an important ornamental and medical fern from Polypodiaceae. Its complete chloroplast genome sequence was characterized through de novo assembly with Illumina sequencing data. The genome size is 158,174 bp, with large single copy (LSC, 82,479 bp) and small single copy (SSC, 21,723 bp) regions separated by a pair of inverted repeats (IR, 26,986 bp). A total of 132 genes were identified, including 88 protein coding genes, 35 tRNA genes, eight rRNA genes, and one pseudogene. Maximum-likelihood phylogenetic tree revealed that P. bonii was most closely related to Lepisorus clathratus. The study will greatly facilitate the chloroplast phylogenomics of Polypodiaceae.
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spelling pubmed-78001462021-01-19 The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern Cai, Shicheng Cai, Xiang Li, Shufeng Liu, Shanshan Wang, Zhen Wang, Ting Su, Yingjuan Mitochondrial DNA B Resour Mitogenome Announcement Pyrrosia bonii is an important ornamental and medical fern from Polypodiaceae. Its complete chloroplast genome sequence was characterized through de novo assembly with Illumina sequencing data. The genome size is 158,174 bp, with large single copy (LSC, 82,479 bp) and small single copy (SSC, 21,723 bp) regions separated by a pair of inverted repeats (IR, 26,986 bp). A total of 132 genes were identified, including 88 protein coding genes, 35 tRNA genes, eight rRNA genes, and one pseudogene. Maximum-likelihood phylogenetic tree revealed that P. bonii was most closely related to Lepisorus clathratus. The study will greatly facilitate the chloroplast phylogenomics of Polypodiaceae. Taylor & Francis 2018-08-13 /pmc/articles/PMC7800146/ /pubmed/33474328 http://dx.doi.org/10.1080/23802359.2018.1491347 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Cai, Shicheng
Cai, Xiang
Li, Shufeng
Liu, Shanshan
Wang, Zhen
Wang, Ting
Su, Yingjuan
The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
title The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
title_full The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
title_fullStr The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
title_full_unstemmed The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
title_short The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
title_sort complete chloroplast genome of pyrrosia bonii (polypodiaceae), an important ornamental and medical fern
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800146/
https://www.ncbi.nlm.nih.gov/pubmed/33474328
http://dx.doi.org/10.1080/23802359.2018.1491347
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