The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop

Coix lacryma-jobi is a cereal and medicinal crop belonging to the Poaceae family. This study characterized complete chloroplast genome sequence of a Korean cultivar Johyun of C. lacryma-jobi var. ma-yuen through the de novo hybrid assembly with Illumina and PacBio genomic reads. The chloroplast geno...

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Autores principales: Kang, Sang-Ho, Lee, Hyun Oh, Shin, Myung Ju, Kim, Nam-Hoon, Choi, Beom-Soon, Kumar, Manu, Ali, Asjad, Lee, Sang-Choon, Kim, Chang-Kug
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
MitoGenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800251/
https://www.ncbi.nlm.nih.gov/pubmed/33490553
http://dx.doi.org/10.1080/23802359.2018.1507653
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author Kang, Sang-Ho
Lee, Hyun Oh
Shin, Myung Ju
Kim, Nam-Hoon
Choi, Beom-Soon
Kumar, Manu
Ali, Asjad
Lee, Sang-Choon
Kim, Chang-Kug
author_facet Kang, Sang-Ho
Lee, Hyun Oh
Shin, Myung Ju
Kim, Nam-Hoon
Choi, Beom-Soon
Kumar, Manu
Ali, Asjad
Lee, Sang-Choon
Kim, Chang-Kug
author_sort Kang, Sang-Ho
collection PubMed
description Coix lacryma-jobi is a cereal and medicinal crop belonging to the Poaceae family. This study characterized complete chloroplast genome sequence of a Korean cultivar Johyun of C. lacryma-jobi var. ma-yuen through the de novo hybrid assembly with Illumina and PacBio genomic reads. The chloroplast genome is 140,863 bp long and composed of large single copy (82,827 bp), small single copy (12,522 bp), and a pair of inverted repeats (each 22,757 bp). A total of 123 genes including 87 protein-coding genes, 32 tRNA genes, and four rRNA genes were predicted in the genome. Phylogenetic analysis confirmed a close relationship of C. lacryma-jobi with species in the Panicoideae subfamily of the Poaceae family.
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spelling pubmed-78002512021-01-21 The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop Kang, Sang-Ho Lee, Hyun Oh Shin, Myung Ju Kim, Nam-Hoon Choi, Beom-Soon Kumar, Manu Ali, Asjad Lee, Sang-Choon Kim, Chang-Kug Mitochondrial DNA B Resour MitoGenome Announcement Coix lacryma-jobi is a cereal and medicinal crop belonging to the Poaceae family. This study characterized complete chloroplast genome sequence of a Korean cultivar Johyun of C. lacryma-jobi var. ma-yuen through the de novo hybrid assembly with Illumina and PacBio genomic reads. The chloroplast genome is 140,863 bp long and composed of large single copy (82,827 bp), small single copy (12,522 bp), and a pair of inverted repeats (each 22,757 bp). A total of 123 genes including 87 protein-coding genes, 32 tRNA genes, and four rRNA genes were predicted in the genome. Phylogenetic analysis confirmed a close relationship of C. lacryma-jobi with species in the Panicoideae subfamily of the Poaceae family. Taylor & Francis 2018-10-23 /pmc/articles/PMC7800251/ /pubmed/33490553 http://dx.doi.org/10.1080/23802359.2018.1507653 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle MitoGenome Announcement
Kang, Sang-Ho
Lee, Hyun Oh
Shin, Myung Ju
Kim, Nam-Hoon
Choi, Beom-Soon
Kumar, Manu
Ali, Asjad
Lee, Sang-Choon
Kim, Chang-Kug
The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop
title The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop
title_full The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop
title_fullStr The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop
title_full_unstemmed The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop
title_short The complete chloroplast genome sequence of Coix lacryma-jobi L. (Poaceae), a cereal and medicinal crop
title_sort complete chloroplast genome sequence of coix lacryma-jobi l. (poaceae), a cereal and medicinal crop
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800251/
https://www.ncbi.nlm.nih.gov/pubmed/33490553
http://dx.doi.org/10.1080/23802359.2018.1507653
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