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Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328
In this study, the complete plastid genome of Porphyridium purpureum strain CCMP1328 was recovered through Illumina sequencing data. This complete plastid genome of P. purpureum was 220,483 bp in length and contained a pair of IR regions (4604 bp). The pt genome of P. purpureum encoded 234 genes inc...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800258/ https://www.ncbi.nlm.nih.gov/pubmed/33490459 http://dx.doi.org/10.1080/23802359.2017.1361358 |
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author | Bi, Guiqi |
author_facet | Bi, Guiqi |
author_sort | Bi, Guiqi |
collection | PubMed |
description | In this study, the complete plastid genome of Porphyridium purpureum strain CCMP1328 was recovered through Illumina sequencing data. This complete plastid genome of P. purpureum was 220,483 bp in length and contained a pair of IR regions (4604 bp). The pt genome of P. purpureum encoded 234 genes including 199 protein-coding genes, 29 tRNA genes, one tmRNA, and six ribosomal RNA genes in IR regions. The overall GC content of P. purpureum cp genome is 30.4%. By phylogenetic analysis using 18S DNA fragments through NJ method, P. purpureum strain CCMP1328 was grouped in the P. purpureum cluster without further distinction. This complete plastid genomes can be subsequently used for evolution studies of red algae and provide valuable insight into dynamic evolution of group II introns. |
format | Online Article Text |
id | pubmed-7800258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78002582021-01-21 Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328 Bi, Guiqi Mitochondrial DNA B Resour Mitogenome Announcement In this study, the complete plastid genome of Porphyridium purpureum strain CCMP1328 was recovered through Illumina sequencing data. This complete plastid genome of P. purpureum was 220,483 bp in length and contained a pair of IR regions (4604 bp). The pt genome of P. purpureum encoded 234 genes including 199 protein-coding genes, 29 tRNA genes, one tmRNA, and six ribosomal RNA genes in IR regions. The overall GC content of P. purpureum cp genome is 30.4%. By phylogenetic analysis using 18S DNA fragments through NJ method, P. purpureum strain CCMP1328 was grouped in the P. purpureum cluster without further distinction. This complete plastid genomes can be subsequently used for evolution studies of red algae and provide valuable insight into dynamic evolution of group II introns. Taylor & Francis 2017-07-31 /pmc/articles/PMC7800258/ /pubmed/33490459 http://dx.doi.org/10.1080/23802359.2017.1361358 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Bi, Guiqi Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328 |
title | Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328 |
title_full | Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328 |
title_fullStr | Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328 |
title_full_unstemmed | Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328 |
title_short | Characterization of the complete plastid genome of Porphyridium purpureum strain CCMP1328 |
title_sort | characterization of the complete plastid genome of porphyridium purpureum strain ccmp1328 |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800258/ https://www.ncbi.nlm.nih.gov/pubmed/33490459 http://dx.doi.org/10.1080/23802359.2017.1361358 |
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