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The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies

The genome of the subsocial cockroach Nauphoeta cinerea was partially sequenced in one-twelfth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA software, yielding a circular molecule of 15,923 bp in length and deposited in GenBank under the accession number KY212743. As e...

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Autores principales: Dumans, Ana Teresa Nogueira, Grimaldi, Danielle Bertino, Furtado, Carolina, Machado, Ednildo de Alcantara, Prosdocimi, Francisco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800285/
https://www.ncbi.nlm.nih.gov/pubmed/33490440
http://dx.doi.org/10.1080/23802359.2017.1285207
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author Dumans, Ana Teresa Nogueira
Grimaldi, Danielle Bertino
Furtado, Carolina
Machado, Ednildo de Alcantara
Prosdocimi, Francisco
author_facet Dumans, Ana Teresa Nogueira
Grimaldi, Danielle Bertino
Furtado, Carolina
Machado, Ednildo de Alcantara
Prosdocimi, Francisco
author_sort Dumans, Ana Teresa Nogueira
collection PubMed
description The genome of the subsocial cockroach Nauphoeta cinerea was partially sequenced in one-twelfth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA software, yielding a circular molecule of 15,923 bp in length and deposited in GenBank under the accession number KY212743. As expected, the mitogenome contained 13 protein-coding genes, 22 transfer tRNAs and 2 ribosomal RNAs. The molecule was assembled using 35,163 sequencing reads of 120 bp each, resulting in ∼286.9× coverage of uniformly distributed reads along the genome. All the 6 complete mitochondrial genomes available for the roaches from the superfamily Blaberoidea were downloaded and compared with the mitogenome of N. cinerea. We also downloaded complete mitochondrial genomes from the superfamily Blattoidea, including 6 mitochondrial genomes of Termitoidae, 2 mitogenomes of Cryptocercoidae and 3 from Blattoidae. A supermatrix dataset presenting the concatenated alignment of all mitochondrial genes was used as input for a maximum likelihood phylogeny. The phylogenomic tree obtained was consistent for most clades, with a relevant exception in the position of the Corydioidea species E. sinensis. Mitochondrial gene information suggests that superfamily Corydioidea should be classified as a clade inside Blattoidea. Nuclear markers and other Corydioidea mitogenomes should be studied to confirm the evolutionary relationships of Blattodea superfamilies.
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spelling pubmed-78002852021-01-21 The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies Dumans, Ana Teresa Nogueira Grimaldi, Danielle Bertino Furtado, Carolina Machado, Ednildo de Alcantara Prosdocimi, Francisco Mitochondrial DNA B Resour Mitogenome Announcement The genome of the subsocial cockroach Nauphoeta cinerea was partially sequenced in one-twelfth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA software, yielding a circular molecule of 15,923 bp in length and deposited in GenBank under the accession number KY212743. As expected, the mitogenome contained 13 protein-coding genes, 22 transfer tRNAs and 2 ribosomal RNAs. The molecule was assembled using 35,163 sequencing reads of 120 bp each, resulting in ∼286.9× coverage of uniformly distributed reads along the genome. All the 6 complete mitochondrial genomes available for the roaches from the superfamily Blaberoidea were downloaded and compared with the mitogenome of N. cinerea. We also downloaded complete mitochondrial genomes from the superfamily Blattoidea, including 6 mitochondrial genomes of Termitoidae, 2 mitogenomes of Cryptocercoidae and 3 from Blattoidae. A supermatrix dataset presenting the concatenated alignment of all mitochondrial genes was used as input for a maximum likelihood phylogeny. The phylogenomic tree obtained was consistent for most clades, with a relevant exception in the position of the Corydioidea species E. sinensis. Mitochondrial gene information suggests that superfamily Corydioidea should be classified as a clade inside Blattoidea. Nuclear markers and other Corydioidea mitogenomes should be studied to confirm the evolutionary relationships of Blattodea superfamilies. Taylor & Francis 2017-02-06 /pmc/articles/PMC7800285/ /pubmed/33490440 http://dx.doi.org/10.1080/23802359.2017.1285207 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Dumans, Ana Teresa Nogueira
Grimaldi, Danielle Bertino
Furtado, Carolina
Machado, Ednildo de Alcantara
Prosdocimi, Francisco
The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
title The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
title_full The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
title_fullStr The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
title_full_unstemmed The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
title_short The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
title_sort complete mitochondrial genome of the subsocial cockroach nauphoeta cinerea and phylogenomic analyses of blattodea mitogenomes suggest reclassification of superfamilies
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800285/
https://www.ncbi.nlm.nih.gov/pubmed/33490440
http://dx.doi.org/10.1080/23802359.2017.1285207
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