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Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)

In this study, the complete mitogenome sequence of nereid worm, Namalycastis abiuma (Annelida: Nereididae), has been decoded for the first time by low coverage genome sequencing method. The overall base composition of N. abiuma mitogenome is 30.8% for A, 24.6% for C, 14.0% for G and 30.6% for T, and...

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Autores principales: Lin, Geng-Ming, Shen, Kang-Ning, Hsiao, Chung-Der
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800286/
https://www.ncbi.nlm.nih.gov/pubmed/33490388
http://dx.doi.org/10.1080/23802359.2015.1137845
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author Lin, Geng-Ming
Shen, Kang-Ning
Hsiao, Chung-Der
author_facet Lin, Geng-Ming
Shen, Kang-Ning
Hsiao, Chung-Der
author_sort Lin, Geng-Ming
collection PubMed
description In this study, the complete mitogenome sequence of nereid worm, Namalycastis abiuma (Annelida: Nereididae), has been decoded for the first time by low coverage genome sequencing method. The overall base composition of N. abiuma mitogenome is 30.8% for A, 24.6% for C, 14.0% for G and 30.6% for T, and has GC content of 38.6%. The assembled mitogenome, consisting of 15 265 bp, has unique 13 protein-coding genes (PCGs), 21 transfer RNAs and two ribosomal RNA genes. The complete mitogenome of N. abiuma shows 69% identities to Tylorrhynchus heterochaetus. All PCGs, tRNA and rRNA genes were encoded on H-strand. The potential D-loop is 827 bp in length and located between tRNA-Gly and tRNA-Trp. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for Annelida.
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spelling pubmed-78002862021-01-21 Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) Lin, Geng-Ming Shen, Kang-Ning Hsiao, Chung-Der Mitochondrial DNA B Resour Mitogenome Announcement In this study, the complete mitogenome sequence of nereid worm, Namalycastis abiuma (Annelida: Nereididae), has been decoded for the first time by low coverage genome sequencing method. The overall base composition of N. abiuma mitogenome is 30.8% for A, 24.6% for C, 14.0% for G and 30.6% for T, and has GC content of 38.6%. The assembled mitogenome, consisting of 15 265 bp, has unique 13 protein-coding genes (PCGs), 21 transfer RNAs and two ribosomal RNA genes. The complete mitogenome of N. abiuma shows 69% identities to Tylorrhynchus heterochaetus. All PCGs, tRNA and rRNA genes were encoded on H-strand. The potential D-loop is 827 bp in length and located between tRNA-Gly and tRNA-Trp. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for Annelida. Taylor & Francis 2016-02-01 /pmc/articles/PMC7800286/ /pubmed/33490388 http://dx.doi.org/10.1080/23802359.2015.1137845 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lin, Geng-Ming
Shen, Kang-Ning
Hsiao, Chung-Der
Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)
title Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)
title_full Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)
title_fullStr Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)
title_full_unstemmed Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)
title_short Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)
title_sort next generation sequencing yields the complete mitogenome of nereid worm, namalycastis abiuma (annelida: nereididae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800286/
https://www.ncbi.nlm.nih.gov/pubmed/33490388
http://dx.doi.org/10.1080/23802359.2015.1137845
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