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Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae)
In this study, the complete mitogenome sequence of nereid worm, Namalycastis abiuma (Annelida: Nereididae), has been decoded for the first time by low coverage genome sequencing method. The overall base composition of N. abiuma mitogenome is 30.8% for A, 24.6% for C, 14.0% for G and 30.6% for T, and...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800286/ https://www.ncbi.nlm.nih.gov/pubmed/33490388 http://dx.doi.org/10.1080/23802359.2015.1137845 |
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author | Lin, Geng-Ming Shen, Kang-Ning Hsiao, Chung-Der |
author_facet | Lin, Geng-Ming Shen, Kang-Ning Hsiao, Chung-Der |
author_sort | Lin, Geng-Ming |
collection | PubMed |
description | In this study, the complete mitogenome sequence of nereid worm, Namalycastis abiuma (Annelida: Nereididae), has been decoded for the first time by low coverage genome sequencing method. The overall base composition of N. abiuma mitogenome is 30.8% for A, 24.6% for C, 14.0% for G and 30.6% for T, and has GC content of 38.6%. The assembled mitogenome, consisting of 15 265 bp, has unique 13 protein-coding genes (PCGs), 21 transfer RNAs and two ribosomal RNA genes. The complete mitogenome of N. abiuma shows 69% identities to Tylorrhynchus heterochaetus. All PCGs, tRNA and rRNA genes were encoded on H-strand. The potential D-loop is 827 bp in length and located between tRNA-Gly and tRNA-Trp. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for Annelida. |
format | Online Article Text |
id | pubmed-7800286 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78002862021-01-21 Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) Lin, Geng-Ming Shen, Kang-Ning Hsiao, Chung-Der Mitochondrial DNA B Resour Mitogenome Announcement In this study, the complete mitogenome sequence of nereid worm, Namalycastis abiuma (Annelida: Nereididae), has been decoded for the first time by low coverage genome sequencing method. The overall base composition of N. abiuma mitogenome is 30.8% for A, 24.6% for C, 14.0% for G and 30.6% for T, and has GC content of 38.6%. The assembled mitogenome, consisting of 15 265 bp, has unique 13 protein-coding genes (PCGs), 21 transfer RNAs and two ribosomal RNA genes. The complete mitogenome of N. abiuma shows 69% identities to Tylorrhynchus heterochaetus. All PCGs, tRNA and rRNA genes were encoded on H-strand. The potential D-loop is 827 bp in length and located between tRNA-Gly and tRNA-Trp. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for Annelida. Taylor & Francis 2016-02-01 /pmc/articles/PMC7800286/ /pubmed/33490388 http://dx.doi.org/10.1080/23802359.2015.1137845 Text en © 2016 The Author(s). Published by Taylor & Francis. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Lin, Geng-Ming Shen, Kang-Ning Hsiao, Chung-Der Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) |
title | Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) |
title_full | Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) |
title_fullStr | Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) |
title_full_unstemmed | Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) |
title_short | Next generation sequencing yields the complete mitogenome of nereid worm, Namalycastis abiuma (Annelida: Nereididae) |
title_sort | next generation sequencing yields the complete mitogenome of nereid worm, namalycastis abiuma (annelida: nereididae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800286/ https://www.ncbi.nlm.nih.gov/pubmed/33490388 http://dx.doi.org/10.1080/23802359.2015.1137845 |
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