Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)

The whole chloroplast (cp) genome sequence of Fraxinus mandshurica has been characterized from Illumina pair-end sequencing. The complete cp genome was 155,530 bp in length, containing a large single copy region (LSC) of 86,415 bp and a small single copy region (SSC) of 19,279 bp, which were separat...

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Detalles Bibliográficos
Autores principales: Zhao, Yuemei, Zhou, Tao, Zhang, Xiao, Chen, Xiaodan, Bai, Guoqing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800290/
https://www.ncbi.nlm.nih.gov/pubmed/33490577
http://dx.doi.org/10.1080/23802359.2018.1532833
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author Zhao, Yuemei
Zhou, Tao
Zhang, Xiao
Chen, Xiaodan
Bai, Guoqing
author_facet Zhao, Yuemei
Zhou, Tao
Zhang, Xiao
Chen, Xiaodan
Bai, Guoqing
author_sort Zhao, Yuemei
collection PubMed
description The whole chloroplast (cp) genome sequence of Fraxinus mandshurica has been characterized from Illumina pair-end sequencing. The complete cp genome was 155,530 bp in length, containing a large single copy region (LSC) of 86,415 bp and a small single copy region (SSC) of 19,279 bp, which were separated by a pair of inverted repeat (IR) regions of 25,653 bp. The genome contained 133 genes, including 88 protein-coding genes, 37 tRNA genes and eight ribosomal RNA genes (four rRNA species). Most genes occur as a single copy, while 19 gene species are duplicated. phylogenetic analysis revealed that F. mandshurica is closely related to the species of F. chiisanensis and F. excelsior.
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spelling pubmed-78002902021-01-21 Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae) Zhao, Yuemei Zhou, Tao Zhang, Xiao Chen, Xiaodan Bai, Guoqing Mitochondrial DNA B Resour Mitogenome Announcement The whole chloroplast (cp) genome sequence of Fraxinus mandshurica has been characterized from Illumina pair-end sequencing. The complete cp genome was 155,530 bp in length, containing a large single copy region (LSC) of 86,415 bp and a small single copy region (SSC) of 19,279 bp, which were separated by a pair of inverted repeat (IR) regions of 25,653 bp. The genome contained 133 genes, including 88 protein-coding genes, 37 tRNA genes and eight ribosomal RNA genes (four rRNA species). Most genes occur as a single copy, while 19 gene species are duplicated. phylogenetic analysis revealed that F. mandshurica is closely related to the species of F. chiisanensis and F. excelsior. Taylor & Francis 2018-10-26 /pmc/articles/PMC7800290/ /pubmed/33490577 http://dx.doi.org/10.1080/23802359.2018.1532833 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhao, Yuemei
Zhou, Tao
Zhang, Xiao
Chen, Xiaodan
Bai, Guoqing
Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)
title Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)
title_full Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)
title_fullStr Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)
title_short Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)
title_sort characterization of the complete chloroplast genome of fraxinus mandshurica (oleaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800290/
https://www.ncbi.nlm.nih.gov/pubmed/33490577
http://dx.doi.org/10.1080/23802359.2018.1532833
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