The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China

The complete chloroplast genome of Fargesia qinlingensis (Poaceae) has been reconstructed from the whole-genome Illumina sequencing data. The complete chloroplast genome sequence of F. qinlingensis obtained in this study was 139,640 bp in length, with a large single copy (LSC) region of 83,220 bp, a...

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Autores principales: Zhou, Ya Fu, Wang, Yu Chao, Ni, Xi Lu, Mao, Shao Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800314/
https://www.ncbi.nlm.nih.gov/pubmed/33490523
http://dx.doi.org/10.1080/23802359.2018.1473739
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author Zhou, Ya Fu
Wang, Yu Chao
Ni, Xi Lu
Mao, Shao Li
author_facet Zhou, Ya Fu
Wang, Yu Chao
Ni, Xi Lu
Mao, Shao Li
author_sort Zhou, Ya Fu
collection PubMed
description The complete chloroplast genome of Fargesia qinlingensis (Poaceae) has been reconstructed from the whole-genome Illumina sequencing data. The complete chloroplast genome sequence of F. qinlingensis obtained in this study was 139,640 bp in length, with a large single copy (LSC) region of 83,220 bp, a small single copy (SSC) region of 12,826 bp, separated by two inverted repeat (IR) regions of 21,797 bp each. The GC content was 38.9%, and in the LSC, SSC, and IR regions were 37.0%, 33.2%, and 44.2%, respectively. A total of 130 genes were annotated, including 83 protein-coding genes (PCGs), 39 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The result of the phylogenetic analysis showed that F. qinlingensis was more closely related to the species of F. denudata.
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spelling pubmed-78003142021-01-21 The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China Zhou, Ya Fu Wang, Yu Chao Ni, Xi Lu Mao, Shao Li Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Fargesia qinlingensis (Poaceae) has been reconstructed from the whole-genome Illumina sequencing data. The complete chloroplast genome sequence of F. qinlingensis obtained in this study was 139,640 bp in length, with a large single copy (LSC) region of 83,220 bp, a small single copy (SSC) region of 12,826 bp, separated by two inverted repeat (IR) regions of 21,797 bp each. The GC content was 38.9%, and in the LSC, SSC, and IR regions were 37.0%, 33.2%, and 44.2%, respectively. A total of 130 genes were annotated, including 83 protein-coding genes (PCGs), 39 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. The result of the phylogenetic analysis showed that F. qinlingensis was more closely related to the species of F. denudata. Taylor & Francis 2018-05-18 /pmc/articles/PMC7800314/ /pubmed/33490523 http://dx.doi.org/10.1080/23802359.2018.1473739 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhou, Ya Fu
Wang, Yu Chao
Ni, Xi Lu
Mao, Shao Li
The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China
title The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China
title_full The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China
title_fullStr The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China
title_full_unstemmed The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China
title_short The complete chloroplast genome sequence of Fargesia qinlingensis (Poaceae): an endemic to China
title_sort complete chloroplast genome sequence of fargesia qinlingensis (poaceae): an endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800314/
https://www.ncbi.nlm.nih.gov/pubmed/33490523
http://dx.doi.org/10.1080/23802359.2018.1473739
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