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The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)

The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small s...

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Autores principales: Jo, Sangjin, Kim, Hoe-Won, Kim, Young-Kee, Sohn, Jung-Yeon, Cheon, Se-Hwan, Kim, Ki-Joong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800348/
https://www.ncbi.nlm.nih.gov/pubmed/33490474
http://dx.doi.org/10.1080/23802359.2017.1390406
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author Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
author_facet Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
author_sort Jo, Sangjin
collection PubMed
description The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support.
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spelling pubmed-78003482021-01-21 The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support. Taylor & Francis 2017-10-18 /pmc/articles/PMC7800348/ /pubmed/33490474 http://dx.doi.org/10.1080/23802359.2017.1390406 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
title The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
title_full The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
title_fullStr The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
title_full_unstemmed The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
title_short The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
title_sort complete plastome of tropical fruit garcinia mangostana (clusiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800348/
https://www.ncbi.nlm.nih.gov/pubmed/33490474
http://dx.doi.org/10.1080/23802359.2017.1390406
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