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The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae)
The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small s...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800348/ https://www.ncbi.nlm.nih.gov/pubmed/33490474 http://dx.doi.org/10.1080/23802359.2017.1390406 |
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author | Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong |
author_facet | Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong |
author_sort | Jo, Sangjin |
collection | PubMed |
description | The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support. |
format | Online Article Text |
id | pubmed-7800348 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78003482021-01-21 The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement The complete plastome sequence of Garcinia mangostana L. (Clusiaceae) is completed in this study (NCBI acc. no. KX822787). This is a first complete plastome sequence from the Clusiaceae. The complete plastome size is 158,179 bp in length and consists of a large single copy of 86,458 bp and a small single copy of 17,703 bp, separated by two inverted repeats of 27,009 bp. The G. mangostana plastome shows four minor structural modifications including infA gene loss, rpl32 gene loss, ycf3 gene intron loss and a 363 bp inversion between trnV-UAC and atpE gene. The plastome contains 111 genes, of which 77 are protein-coding genes, 30 are tRNA genes and four are rRNA genes. The average A-T content of the plastome is 63.9%. A total of 110 simple sequence loci are identified from the genome. Phylogenetic analysis reveals that G. mangostana is a sister group of Erythroxylum novogranatense (Erythroxylaceae) with 78% bootstrap support. Taylor & Francis 2017-10-18 /pmc/articles/PMC7800348/ /pubmed/33490474 http://dx.doi.org/10.1080/23802359.2017.1390406 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
title | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
title_full | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
title_fullStr | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
title_full_unstemmed | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
title_short | The complete plastome of tropical fruit Garcinia mangostana (Clusiaceae) |
title_sort | complete plastome of tropical fruit garcinia mangostana (clusiaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800348/ https://www.ncbi.nlm.nih.gov/pubmed/33490474 http://dx.doi.org/10.1080/23802359.2017.1390406 |
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