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Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae)
Lycium ruthenicum is a precious desert plant with high medicinal and ecological values. It contains rich anthocyanins, which are safe natural pigments and could be used for natural food colorants. In this study, the complete chloroplast (cp) genome of L. ruthenicum was assembled on the basis of next...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800349/ https://www.ncbi.nlm.nih.gov/pubmed/33490508 http://dx.doi.org/10.1080/23802359.2018.1450681 |
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author | Yisilam, Gulbar Mamut, Reyim Li, Jin Li, Pan Fu, Chengxin |
author_facet | Yisilam, Gulbar Mamut, Reyim Li, Jin Li, Pan Fu, Chengxin |
author_sort | Yisilam, Gulbar |
collection | PubMed |
description | Lycium ruthenicum is a precious desert plant with high medicinal and ecological values. It contains rich anthocyanins, which are safe natural pigments and could be used for natural food colorants. In this study, the complete chloroplast (cp) genome of L. ruthenicum was assembled on the basis of next generation sequencing. The whole genome is 154,996 bp in length, including two single copy regions (LSC: 85,993 bp and SSC: 18,213 bp) and two inverted repeat regions (IR: 25,395 bp). The overall G + C content of the genome is 37.9%. The cp genome consists of 111 unique genes, including 30 tRNA genes, 4 rRNA genes and 77 protein-coding genes. Phylogenetic analysis indicates that L. ruthenicum is closely clustered with Atropa belladonna, Przewalskia tangutica, and Scopolia parviflora. |
format | Online Article Text |
id | pubmed-7800349 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78003492021-01-21 Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae) Yisilam, Gulbar Mamut, Reyim Li, Jin Li, Pan Fu, Chengxin Mitochondrial DNA B Resour Mitogenome Announcement Lycium ruthenicum is a precious desert plant with high medicinal and ecological values. It contains rich anthocyanins, which are safe natural pigments and could be used for natural food colorants. In this study, the complete chloroplast (cp) genome of L. ruthenicum was assembled on the basis of next generation sequencing. The whole genome is 154,996 bp in length, including two single copy regions (LSC: 85,993 bp and SSC: 18,213 bp) and two inverted repeat regions (IR: 25,395 bp). The overall G + C content of the genome is 37.9%. The cp genome consists of 111 unique genes, including 30 tRNA genes, 4 rRNA genes and 77 protein-coding genes. Phylogenetic analysis indicates that L. ruthenicum is closely clustered with Atropa belladonna, Przewalskia tangutica, and Scopolia parviflora. Taylor & Francis 2018-03-22 /pmc/articles/PMC7800349/ /pubmed/33490508 http://dx.doi.org/10.1080/23802359.2018.1450681 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Yisilam, Gulbar Mamut, Reyim Li, Jin Li, Pan Fu, Chengxin Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae) |
title | Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae) |
title_full | Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae) |
title_short | Characterization of the complete chloroplast genome of Lycium ruthenicum (Solanaceae) |
title_sort | characterization of the complete chloroplast genome of lycium ruthenicum (solanaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800349/ https://www.ncbi.nlm.nih.gov/pubmed/33490508 http://dx.doi.org/10.1080/23802359.2018.1450681 |
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