The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae)

The complete chloroplast genome of Campylandra chinensis from China was analyzed using next-generation sequencing. The chloroplast genome was a 169,419 bp circular molecule and was predicted to contain a large single copy (LSC) of 86,752 bp and a small single copy (SSC) of 21,363 bp, which were sepa...

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Detalles Bibliográficos
Autores principales: Zhou, Yafu, Wang, Yuchao, Shi, Xinwei, Mao, Shaoli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800404/
https://www.ncbi.nlm.nih.gov/pubmed/33490535
http://dx.doi.org/10.1080/23802359.2018.1491346
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author Zhou, Yafu
Wang, Yuchao
Shi, Xinwei
Mao, Shaoli
author_facet Zhou, Yafu
Wang, Yuchao
Shi, Xinwei
Mao, Shaoli
author_sort Zhou, Yafu
collection PubMed
description The complete chloroplast genome of Campylandra chinensis from China was analyzed using next-generation sequencing. The chloroplast genome was a 169,419 bp circular molecule and was predicted to contain a large single copy (LSC) of 86,752 bp and a small single copy (SSC) of 21,363 bp, which were separated by a pair of 25,340 bp inverted repeats (IRs). A total of 132 unique genes were annotated, including 86 protein coding genes, 38 tRNA genes, and 8 rRNA genes. Among these genes, 19 genes contained one or two introns. The overall GC contents of the plastid genome was 37.2%. Phylogenetic analysis showed that C. chinensis and Polygonatum species clustered to one clade with a high bootstrap value at the base of the phylogenetic tree.
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spelling pubmed-78004042021-01-21 The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae) Zhou, Yafu Wang, Yuchao Shi, Xinwei Mao, Shaoli Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Campylandra chinensis from China was analyzed using next-generation sequencing. The chloroplast genome was a 169,419 bp circular molecule and was predicted to contain a large single copy (LSC) of 86,752 bp and a small single copy (SSC) of 21,363 bp, which were separated by a pair of 25,340 bp inverted repeats (IRs). A total of 132 unique genes were annotated, including 86 protein coding genes, 38 tRNA genes, and 8 rRNA genes. Among these genes, 19 genes contained one or two introns. The overall GC contents of the plastid genome was 37.2%. Phylogenetic analysis showed that C. chinensis and Polygonatum species clustered to one clade with a high bootstrap value at the base of the phylogenetic tree. Taylor & Francis 2018-07-11 /pmc/articles/PMC7800404/ /pubmed/33490535 http://dx.doi.org/10.1080/23802359.2018.1491346 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhou, Yafu
Wang, Yuchao
Shi, Xinwei
Mao, Shaoli
The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae)
title The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae)
title_full The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae)
title_fullStr The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae)
title_full_unstemmed The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae)
title_short The complete chloroplast genome sequence of Campylandra chinensis (Liliaceae)
title_sort complete chloroplast genome sequence of campylandra chinensis (liliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800404/
https://www.ncbi.nlm.nih.gov/pubmed/33490535
http://dx.doi.org/10.1080/23802359.2018.1491346
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