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Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa

The nucleotide sequence of the two chloroplast (cp) genomes from Paulownia coreana and P. tomentosa are the first to be completed in genus Paulownia of family Paulowniaceae. The structure of two Paulownia cp genomes shows similar characteristic with general cp genome of angiosperms. The lengths of t...

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Autores principales: Yi, Dong-Keun, Kim, Ki-Joong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800411/
https://www.ncbi.nlm.nih.gov/pubmed/33473576
http://dx.doi.org/10.1080/23802359.2016.1214546
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author Yi, Dong-Keun
Kim, Ki-Joong
author_facet Yi, Dong-Keun
Kim, Ki-Joong
author_sort Yi, Dong-Keun
collection PubMed
description The nucleotide sequence of the two chloroplast (cp) genomes from Paulownia coreana and P. tomentosa are the first to be completed in genus Paulownia of family Paulowniaceae. The structure of two Paulownia cp genomes shows similar characteristic with general cp genome of angiosperms. The lengths of two cp genomes are 154,545 bp and 154,540 bp, respectively. The cp genomes are divided into LSC region (85,241 bp and 85,236 bp) and SSC region (17,736 bp and 17,736 bp) by two IR regions (25,784 bp and 25,784 bp). Both of two cp genomes contain 113 genes (79 protein coding genes, 30 tRNA genes and 4 rRNA genes), eight protein-coding genes, seven tRNA genes and four rRNA genes duplicated in the IR regions. Similar to the general cp genome of angiosperms, 18 of the genes in the two cp genomes have one or two introns. The overall A-T contents of two genomes are 62.0% which is similar with general angiosperms. The A-T content in the non-coding (64.6%) is higher than in the coding (60.1%) regions. Seventy-one and seventy simple sequence repeat (SSR) loci were identified in the P. coreana and P. tomentosa cp genomes, respectively. In phylogenetic analysis, genus Paulownia shows closed relationship with Lindenbergia philippensis of Orobanchaceae.
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spelling pubmed-78004112021-01-19 Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa Yi, Dong-Keun Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement The nucleotide sequence of the two chloroplast (cp) genomes from Paulownia coreana and P. tomentosa are the first to be completed in genus Paulownia of family Paulowniaceae. The structure of two Paulownia cp genomes shows similar characteristic with general cp genome of angiosperms. The lengths of two cp genomes are 154,545 bp and 154,540 bp, respectively. The cp genomes are divided into LSC region (85,241 bp and 85,236 bp) and SSC region (17,736 bp and 17,736 bp) by two IR regions (25,784 bp and 25,784 bp). Both of two cp genomes contain 113 genes (79 protein coding genes, 30 tRNA genes and 4 rRNA genes), eight protein-coding genes, seven tRNA genes and four rRNA genes duplicated in the IR regions. Similar to the general cp genome of angiosperms, 18 of the genes in the two cp genomes have one or two introns. The overall A-T contents of two genomes are 62.0% which is similar with general angiosperms. The A-T content in the non-coding (64.6%) is higher than in the coding (60.1%) regions. Seventy-one and seventy simple sequence repeat (SSR) loci were identified in the P. coreana and P. tomentosa cp genomes, respectively. In phylogenetic analysis, genus Paulownia shows closed relationship with Lindenbergia philippensis of Orobanchaceae. Taylor & Francis 2016-09-05 /pmc/articles/PMC7800411/ /pubmed/33473576 http://dx.doi.org/10.1080/23802359.2016.1214546 Text en © 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Yi, Dong-Keun
Kim, Ki-Joong
Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa
title Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa
title_full Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa
title_fullStr Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa
title_full_unstemmed Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa
title_short Two complete chloroplast genome sequences of genus Paulownia (Paulowniaceae): Paulownia coreana and P. tomentosa
title_sort two complete chloroplast genome sequences of genus paulownia (paulowniaceae): paulownia coreana and p. tomentosa
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800411/
https://www.ncbi.nlm.nih.gov/pubmed/33473576
http://dx.doi.org/10.1080/23802359.2016.1214546
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