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The complete plastome sequences of Mangifera indica L. (Anacardiaceae)
In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,7...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800470/ https://www.ncbi.nlm.nih.gov/pubmed/33473951 http://dx.doi.org/10.1080/23802359.2017.1390407 |
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author | Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong |
author_facet | Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong |
author_sort | Jo, Sangjin |
collection | PubMed |
description | In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support. |
format | Online Article Text |
id | pubmed-7800470 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78004702021-01-19 The complete plastome sequences of Mangifera indica L. (Anacardiaceae) Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support. Taylor & Francis 2017-10-14 /pmc/articles/PMC7800470/ /pubmed/33473951 http://dx.doi.org/10.1080/23802359.2017.1390407 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong The complete plastome sequences of Mangifera indica L. (Anacardiaceae) |
title | The complete plastome sequences of Mangifera indica L. (Anacardiaceae) |
title_full | The complete plastome sequences of Mangifera indica L. (Anacardiaceae) |
title_fullStr | The complete plastome sequences of Mangifera indica L. (Anacardiaceae) |
title_full_unstemmed | The complete plastome sequences of Mangifera indica L. (Anacardiaceae) |
title_short | The complete plastome sequences of Mangifera indica L. (Anacardiaceae) |
title_sort | complete plastome sequences of mangifera indica l. (anacardiaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800470/ https://www.ncbi.nlm.nih.gov/pubmed/33473951 http://dx.doi.org/10.1080/23802359.2017.1390407 |
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