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The complete plastome sequences of Mangifera indica L. (Anacardiaceae)

In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,7...

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Autores principales: Jo, Sangjin, Kim, Hoe-Won, Kim, Young-Kee, Sohn, Jung-Yeon, Cheon, Se-Hwan, Kim, Ki-Joong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800470/
https://www.ncbi.nlm.nih.gov/pubmed/33473951
http://dx.doi.org/10.1080/23802359.2017.1390407
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author Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
author_facet Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
author_sort Jo, Sangjin
collection PubMed
description In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support.
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spelling pubmed-78004702021-01-19 The complete plastome sequences of Mangifera indica L. (Anacardiaceae) Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Sohn, Jung-Yeon Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement In this study, we determined the complete plastome sequence of Mangifera indica L. (Anacardiaceae) (NCBI acc. no. KX871231). The complete plastome is 157,780 bp in length, and consists of a large single copy of 86,673 bp and a small single copy of 18,349 bp, separated by two inverted repeats of 25,792 bp. The plastome contains 112 genes, of which 78 are protein-coding genes, 30 are tRNA genes, and four are rRNA genes. Sixteen genes contain one intron and two genes have two introns. The average A-T content of the plastome is 62.1%. The M. indica plastome has approximately 15 kb inversion between trnT-UGU and trnT-GGU. We identify a palindromic repeat of 18 bp (ATTCTTTTTTTTTTTTTT/AAAAAAAAAAAAAAGAAT) near the inversion breakpoints of M. indica plastome. Phylogenetic analysis revealed that M. indica is a sister group of Rhus chinensis with 100% bootstrap support. Anacardiaceae clade is a sister group of Boswellia sacra (Burseraceae) with 100% bootstrap support. Taylor & Francis 2017-10-14 /pmc/articles/PMC7800470/ /pubmed/33473951 http://dx.doi.org/10.1080/23802359.2017.1390407 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Sohn, Jung-Yeon
Cheon, Se-Hwan
Kim, Ki-Joong
The complete plastome sequences of Mangifera indica L. (Anacardiaceae)
title The complete plastome sequences of Mangifera indica L. (Anacardiaceae)
title_full The complete plastome sequences of Mangifera indica L. (Anacardiaceae)
title_fullStr The complete plastome sequences of Mangifera indica L. (Anacardiaceae)
title_full_unstemmed The complete plastome sequences of Mangifera indica L. (Anacardiaceae)
title_short The complete plastome sequences of Mangifera indica L. (Anacardiaceae)
title_sort complete plastome sequences of mangifera indica l. (anacardiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800470/
https://www.ncbi.nlm.nih.gov/pubmed/33473951
http://dx.doi.org/10.1080/23802359.2017.1390407
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