Cargando…

Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae)

The tiger beetle, Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae), has been listed as an Endangered insect in South Korea. We sequenced the complete mitochondrial genome (mitogenome) of this organism (16,388 bp). The genome includes a typical set of genes (13 protein-coding genes (PCGs)...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Ah Rha, Kim, Min Jee, Jeong, Su Yeon, Kim, Iksoo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800485/
https://www.ncbi.nlm.nih.gov/pubmed/33474143
http://dx.doi.org/10.1080/23802359.2018.1443040
_version_ 1783635365311021056
author Wang, Ah Rha
Kim, Min Jee
Jeong, Su Yeon
Kim, Iksoo
author_facet Wang, Ah Rha
Kim, Min Jee
Jeong, Su Yeon
Kim, Iksoo
author_sort Wang, Ah Rha
collection PubMed
description The tiger beetle, Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae), has been listed as an Endangered insect in South Korea. We sequenced the complete mitochondrial genome (mitogenome) of this organism (16,388 bp). The genome includes a typical set of genes (13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes) and 1 non-coding region with an arrangement identical to that observed in most insect genomes. Twelve PCGs had the typical ATN start codon, whereas ND1 had the atypical TTG codon. The AT-rich region is 1629-bp long, composed of 80.0% A + T nucleotides, and has no long repeat sequences. Phylogenetic analyses with concatenated sequences of the 13 PCGs and 2 rRNA genes, using the Bayesian inference (BI) method, placed C. anchoralis as a sister to the within-subfamilial species Habrodera capensis, with the highest nodal support presented by both BI and maximum likelihood (ML) methods. Three subfamilies represented by more than one species (Cicindelinae, Harpalinae, and Carabinae) were all determined by both BI and ML analyses to form strong monophyletic groups.
format Online
Article
Text
id pubmed-7800485
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78004852021-01-19 Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae) Wang, Ah Rha Kim, Min Jee Jeong, Su Yeon Kim, Iksoo Mitochondrial DNA B Resour Mitogenome Announcement The tiger beetle, Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae), has been listed as an Endangered insect in South Korea. We sequenced the complete mitochondrial genome (mitogenome) of this organism (16,388 bp). The genome includes a typical set of genes (13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes) and 1 non-coding region with an arrangement identical to that observed in most insect genomes. Twelve PCGs had the typical ATN start codon, whereas ND1 had the atypical TTG codon. The AT-rich region is 1629-bp long, composed of 80.0% A + T nucleotides, and has no long repeat sequences. Phylogenetic analyses with concatenated sequences of the 13 PCGs and 2 rRNA genes, using the Bayesian inference (BI) method, placed C. anchoralis as a sister to the within-subfamilial species Habrodera capensis, with the highest nodal support presented by both BI and maximum likelihood (ML) methods. Three subfamilies represented by more than one species (Cicindelinae, Harpalinae, and Carabinae) were all determined by both BI and ML analyses to form strong monophyletic groups. Taylor & Francis 2018-02-24 /pmc/articles/PMC7800485/ /pubmed/33474143 http://dx.doi.org/10.1080/23802359.2018.1443040 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Ah Rha
Kim, Min Jee
Jeong, Su Yeon
Kim, Iksoo
Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae)
title Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae)
title_full Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae)
title_fullStr Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae)
title_full_unstemmed Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae)
title_short Complete mitochondrial genome sequence of Cicindela anchoralis Chevrolat, 1845 (Coleoptera: Carabidae)
title_sort complete mitochondrial genome sequence of cicindela anchoralis chevrolat, 1845 (coleoptera: carabidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800485/
https://www.ncbi.nlm.nih.gov/pubmed/33474143
http://dx.doi.org/10.1080/23802359.2018.1443040
work_keys_str_mv AT wangahrha completemitochondrialgenomesequenceofcicindelaanchoralischevrolat1845coleopteracarabidae
AT kimminjee completemitochondrialgenomesequenceofcicindelaanchoralischevrolat1845coleopteracarabidae
AT jeongsuyeon completemitochondrialgenomesequenceofcicindelaanchoralischevrolat1845coleopteracarabidae
AT kimiksoo completemitochondrialgenomesequenceofcicindelaanchoralischevrolat1845coleopteracarabidae